Magnetovirga frankeli: D5125_02740
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Entry
D5125_02740 CDS
T11075
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mfra Magnetovirga frankeli
Brite
KEGG Orthology (KO) [BR:
mfra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mfra03016
]
D5125_02740
Enzymes [BR:
mfra01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
D5125_02740
Transfer RNA biogenesis [BR:
mfra03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
D5125_02740
Prokaryotic type
tRNA splicing ligases
D5125_02740
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DNA_ligase_IV
DUF4514
Motif
Other DBs
NCBI-ProteinID:
QFY88487
LinkDB
All DBs
Position
complement(3158945..3160141)
Genome browser
AA seq
398 aa
AA seq
DB search
MPIKQVISQSAKPVKIWTDEVDEKSREQLANIASLPFIHHHVAAMPDVHLGIGATIGSVI
ATDKAIIPAAVGVDIGCGMIATRLTLHAKDLDEKNLKRVFDQISRDVPLGRAQHADDRAL
GDAARPFARQLDGMTQRHPDLLKSFGKQSKWVNQMGTLGGGNHFIEVCLDEADQVWIMLH
SGSRGIGNAIADYFIKLAKKDMERWFIQLPDQNLAYFAEGSDHFDDYIEAVDWAQRYAYQ
NRQCMLELVLAALRRHLKPFQITKEAINCHHNYVEKEHHYSANVWVTRKGAIRAREGDLG
IIPGSMGTRSYIVRGRGNPESFCSCSHGAGRKMSRTQAEKQFSPADLERQTQGVVCRKDK
GVLDEIPGAYKDIDQVMANQADLVEVVHTLKQVVCVKG
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
gtgccgatcaaacaagtcatcagccaaagcgccaagccggtcaagatctggaccgacgag
gtggatgagaaaagccgggaacagctggccaacatcgccagcctgccgttcattcaccac
cacgtcgcggcgatgccggacgtgcacctgggcatcggtgccaccattggctcggtgatc
gccaccgacaaggccatcatcccggctgccgtcggcgtcgatatcggctgcggcatgatc
gccacgcgcctgaccctgcacgccaaggatctcgacgagaagaatctcaagcgggtgttc
gaccagatcagccgggacgtgcccctgggccgggcccagcatgccgacgaccgcgccctc
ggcgacgcggcgcggcccttcgcccggcaactggacggcatgacccagcgccatcccgat
ctgctcaagtcctttggcaagcaatcgaaatgggtcaaccagatgggcaccctggggggt
ggcaaccacttcatcgaggtctgcctggacgaggccgaccaggtctggatcatgcttcac
tccggcagtcggggcatcggcaacgccattgccgactacttcatcaagctggcgaagaag
gacatggaacgctggttcatccagctgccggaccagaacctggcctactttgccgagggc
agcgatcatttcgatgattacatcgaagcggtggactgggcgcaacgctatgcctaccag
aaccgccagtgcatgctggaactggtgctggccgcgctgcgccggcatctcaagccgttc
cagatcaccaaggaagcgatcaactgccaccacaactacgtcgagaaggagcaccactac
agcgccaacgtctgggtcacccgcaagggcgcgatccgtgcccgggagggcgacctcggc
atcatccccggcagtatgggtacacgctcctacatcgtgcgtggcaggggcaacccggag
agcttctgctcctgttcccacggtgccggtcgcaagatgtcgcgcacccaggccgagaag
cagttcagcccggccgacctggaacgccagacccagggcgtggtatgtcgcaaggacaag
ggcgtactcgacgagatcccgggggcctacaaggacatcgaccaggtcatggccaaccag
gccgacctggtggaggtggtgcataccctgaagcaggtcgtctgcgtcaaggggtga
DBGET
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