Magnetovirga frankeli: D5125_08265
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Entry
D5125_08265 CDS
T11075
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
mfra Magnetovirga frankeli
Pathway
mfra03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mfra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
D5125_08265 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mfra03400
]
D5125_08265 (recD)
Enzymes [BR:
mfra01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
D5125_08265 (recD)
DNA repair and recombination proteins [BR:
mfra03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
D5125_08265 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
AAA_11
Viral_helicase1
AAA_22
SH3_13
NAT10_TcmA_helicase
UvrD-helicase
nSTAND3
T2SSE
PIF1
AAA_25
AAA_28
SLFN-g3_helicase
NTPase_1
UvrD_C
AAA_18
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QFY89481
LinkDB
All DBs
Position
652949..655036
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AA seq
695 aa
AA seq
DB search
MTATSEEILAGLKTWVELGALRWLDLAFAQFAAEQCAQAQAVIPLAAALVSGHNGHGHVC
LDLADLWARPQLQLPQLQEADPRPLRQLQAWLAGWGLEHWLEQLEASGLAQARWSPDWDS
AGTSPLVLDGGQQRPLLYLRRYWGYEQRIRQGIEQRLQPLQLPQGQVRGLLDGLFADDTA
QPRPNWQKIACALAARSGFAIITGGPGTGKTTTVVRLLALLQGLRLRNGQPLLQVRLVAP
TGKAAARLNESIAGSVQGLALDGLLPGDQTQHWRNAIPTEVSTLHRLLGSRPGSRRFRHH
PGNPLALDLVVVDEASMVDVEMMASLVAALPDQARLILLGDKDQLASVEAGSVLGDLCRQ
AERGRYWPATQDWIEQASGEQIGQSAAGPGLIDPQGPALLQATTMLRHSYRFDAHPGIGR
LAERVNTGQARVAEIKTLCVEQAWQGPGKTGSLGYLQLDRHDEQRPDSTLLELVIQGYWP
YLQRIGQMPQGTQPEDWDAWALQVFAAQRRFQLLTAVRAGAFGVEGMNRLIYQALRARLS
QDRDQEPNPNGAEVERRWPVQAGLWYLGRPLLVTRNDYGLRLMNGDIGICLPRPGPQRQW
QRLAAFPDGGGGVRWILPSRLQQVETVFAMTVHKSQGSEFEHSLLLLPDQPSPVLTKELL
YTGITRASQRFTLACPSDPVLQQALSSRVSRGSGL
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgacagcgacatccgaggaaatacttgcaggactaaagacctgggtcgagctgggtgcc
ctgcgctggctggacctggcctttgcccagttcgccgccgagcaatgtgcccaggcccag
gccgtcatccccttggccgcagccctggtcagcggccacaacggccatggccacgtctgc
ctggacctggccgacctctgggcacggccgcagctgcaactgccccagttgcaggaggcc
gaccccaggcccctgcgccaactccaggcctggctggcgggctggggcctggagcattgg
ctggaacaactggaggccagcggcctggcccaggcccgctggtcgcccgactgggattcg
gccggcaccagccccctggtactggatggcgggcagcagcggccgctgctctatctgcgc
cgctattggggctatgagcagcgcattcgccagggcatagagcagcgcctgcaacccctg
caactgccacaggggcaggtacggggcctgctcgacggcctgtttgccgatgacacggcc
cagcctcggcccaattggcagaagattgcctgcgccctggcggcgcgtagcggctttgcc
atcatcaccggcggtccgggcaccggcaagaccaccacagtggtgcgcctgctcgccctg
ctgcaggggctgcgcctgcgcaacggccagccgctgttgcaggttcgcctggtggcaccc
accggcaaggctgcggcacgactgaacgaatccatcgccggcagcgtgcaggggctggcg
ctggacggcctattgccgggggatcagacccagcactggcgcaatgccatccccaccgag
gtcagcaccctgcatcggttgctgggcagtcggccgggcagccgccgctttcgacaccac
ccaggcaaccccctggcgctggacctggtggtggtggatgaggcctccatggtggatgtg
gagatgatggccagcctggtggccgccctgccggatcaggcgcggctgatcctgctcggc
gacaaggatcagctggcctcggtggaggccggctcggtgctcggcgacctctgtcgccag
gccgaacggggccgctactggcctgccacccaggactggatcgagcaggccagcggtgag
cagatcggccaatcggctgccgggccaggcctgatcgacccccagggaccggccctgctg
caagccaccaccatgctgcggcacagctaccggtttgacgcccaccccggcatcggtcgg
ctggccgagcgggtcaacactggccaggcacgggtggcagagatcaagacgctgtgcgtg
gaacaggcctggcaggggccgggcaagaccggctccctgggctatctgcaattggaccgg
cacgacgagcagcggccggacagcacattgctggagcttgtcatccagggctactggccc
tatctgcagcgtatcggccagatgccccagggtacccagcccgaagattgggatgcctgg
gccctgcaggtgttcgccgcgcagcggcgctttcagctgctcactgcggtgcgcgctggg
gcctttggcgtcgagggcatgaaccggctgatctaccaggccctgcgcgcgcgcctgagc
caagaccgggatcaggagccgaacccgaacggagcagaggtcgaacggcgctggccggtc
caggccgggctctggtatctgggtcggcccctgctggtgacccgcaacgactatggcctg
aggctgatgaacggcgatatcggcatctgcctgccacggcccggcccacagcggcagtgg
cagcggctggcggccttccccgatggcgggggcggggtgcgctggatactgcccagccgt
ctgcagcaggtagagacggtgttcgccatgacggtacacaagtctcaaggctcggagttc
gaacacagcctgctgctgctacccgaccagccaagccctgtgctgaccaaggaactgctc
tacaccggcatcacccgcgccagccagcgcttcaccctggcctgccccagcgacccggtg
ctgcaacaggccctgtccagccgggtaagccggggcagcgggctgtaa
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