Magnetovirga frankeli: D5125_10755
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Entry
D5125_10755 CDS
T11075
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
mfra Magnetovirga frankeli
Pathway
mfra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D5125_10755 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfra03019
]
D5125_10755 (pnp)
03016 Transfer RNA biogenesis [BR:
mfra03016
]
D5125_10755 (pnp)
Enzymes [BR:
mfra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
D5125_10755 (pnp)
Messenger RNA biogenesis [BR:
mfra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
D5125_10755 (pnp)
Transfer RNA biogenesis [BR:
mfra03016
]
Prokaryotic type
tRNA degradation factors
D5125_10755 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
PNPase
RNase_PH_C
KH_1
S1_RRP5
OB_RRP5_4th
KH_2
KH-I_KHDC4-BBP
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
QFY91126
LinkDB
All DBs
Position
1212009..1214114
Genome browser
AA seq
701 aa
AA seq
DB search
MPTPIKKEFQFGDHKVVLETGEIARQADGAVLVNMNDTVVFVTVVAEKNSGEGKDFFPLT
IDYQEKTYAAGKIPGGFFKREGRPSEKEILTCRLIDRPIRPLFPKGFNKETQVIATVKSL
NPAVDPEIPALIGASAALMLSGLPFEGPVGAARVGYKDGEYLLNPPVTGLSEVSDLDLVV
AGTSEAVLMVESEARGLSEEIMLGAVLFGHEQMQVVINAIKELAAECAKPALVFEPAAAD
AELQEAVQAECEAAIGEAYTIADKMARYGRLDEIVAAAKAKLCAAAEGETPNWSGDQVYA
AIDKLKKKIVRGRILDGQPRIDGRDTQTVRPIWVRTGVLPRTHGSALFTRGETQAMVITT
LGTEREAQVIDALEGERKDHFMLHYNFPPFCVGELGRVGSPKRREIGHGRLAKRGILACM
PKPEEFPYSIRVVSEITESNGSSSMASVCGTSLSLMDAGVPLKAPVAGVAMGLIKEGERF
AVLTDILGDEDHLGDMDFKVAGTAEGINALQMDIKINGITREIMQVALEQAKAGRLHILA
EMNKVIDHPREVMSEHAPRFITIKIHPDKIRDIIGKGGATIRGLTEETGATIDVQDDGTV
KIFSVDKSAGEEAKKRIELITAEVEVGQIYEGRVARLMDFGAFVTILPGKDGLVHISQIS
DERVEKVSDKLSEGDIIRVKVLEVDKQGRIRLSMKAVEMGE
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
ataccgaccccgattaagaaagaattccagttcggcgaccacaaggtcgtgcttgagacc
ggcgaaatcgcccgtcaggccgatggtgccgtactggtcaacatgaacgataccgtcgtc
ttcgttaccgtggtggcggagaagaacagcggcgagggcaaggacttcttccccctgacc
atcgactatcaggaaaagacctatgctgccggcaagatccccggcggcttcttcaagcgc
gaggggcgtccctcggagaaggagatcctcacctgccgcctgatcgaccggcccatccgg
ccgctgttccccaagggcttcaacaaggagacccaggtcatcgccacggtgaaatcactg
aacccggcggtggacccggagatccctgccctgatcggtgcctccgccgccttgatgcta
tccggtctgcccttcgaaggcccggtgggcgcggcccgggtcggctacaaggacggtgag
tacctgctcaacccgccggtcaccggcctgagcgaggtcagcgacctggacctggtggtg
gccggcaccagcgaggcggtgctgatggtggaatccgaggcccgtggcctgtctgaagag
atcatgctcggtgccgtgctgttcggccacgaacagatgcaggtggtgatcaacgccatc
aaggaactggccgccgaatgcgccaaaccggccctggtgttcgaacccgccgccgccgat
gccgaactgcaggaggcggtgcaggccgagtgcgaggccgccatcggcgaggcctacacc
atcgccgacaagatggcccgctacggccgtctggacgagatcgtcgccgccgccaaggcc
aagctctgcgccgccgccgagggagaaacccccaactggagcggcgatcaggtctatgcc
gcgatcgacaaactgaagaagaagatcgtgcgcggccgcatcctggatggccagccgcgt
atcgacggccgcgacacccagaccgtgcggcccatctgggtgcgcaccggcgtgctgccg
cgcacccatggctcggccctgttcacccgtggcgagacccaggccatggtgatcaccacc
ctgggcaccgagcgcgaggcccaggtgatcgacgccctggaaggggagcgcaaggaccac
ttcatgctgcactacaacttcccgccgttttgcgtcggtgaactgggccgggtcggcagc
cccaaacggcgcgagatcggccatggccgtctggccaagcgcggcatactggcctgtatg
cccaagcccgaagagtttccctactcgatccgcgtggtgtccgagatcacggagtccaac
ggctcctcctccatggcctcggtgtgcggcaccagtctgtcgctgatggatgccggggtg
ccgctcaaggccccggtggccggcgtggccatggggctgatcaaggaaggcgagcgcttt
gccgtgctcaccgacatactgggtgacgaggaccacctgggcgacatggacttcaaggtg
gccggtaccgccgagggcatcaacgccctgcagatggacatcaagatcaacggcatcacc
cgcgagatcatgcaggtggcgctggagcaggccaaggccggacgtctgcacattttggcg
gagatgaataaggtcattgaccatccccgcgaggtgatgtccgagcacgccccgcgcttt
atcaccatcaagatccacccggacaagatccgcgacatcatcggcaagggcggggccacc
atccgtggcctcaccgaagagaccggggccaccatcgacgtacaggacgacggcacggtg
aagatcttctcggtggacaagtccgccggtgaagaggccaagaagcgcatcgagctgatc
accgccgaggtcgaggtggggcagatctacgagggccgcgtggcccgcctgatggacttc
ggcgcctttgtcaccatactgcccggcaaggacggcctggtccacatctcgcagatctcc
gacgagcgggtggaaaaggtcagcgacaagctctccgagggcgacatcatccgcgtcaag
gtgctggaggtggacaagcagggccgcatccgcctgagcatgaaggcggtggagatgggc
gaataa
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