Magnetovirga frankeli: D5125_14215
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Entry
D5125_14215 CDS
T11075
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
mfra Magnetovirga frankeli
Brite
KEGG Orthology (KO) [BR:
mfra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mfra03016
]
D5125_14215
Enzymes [BR:
mfra01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
D5125_14215
Transfer RNA biogenesis [BR:
mfra03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
D5125_14215
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QFY90541
UniProt:
A0A5Q0EN18
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All DBs
Position
1949326..1951143
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AA seq
605 aa
AA seq
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MSPEKLQINALVLYKGHPARILALADKVEIELEGGKTKRVRDKDVILLHPGPLQQLQGLP
GEAADVTEAWELLEGEESRFADLLELVFERPGPAQAWSLWLSLAEGLWFEGDINALRPRS
AEQIAADRAAREEKARKEQEWADLLQRLQQRQILAEDRGQLSEVERLALGQLAQSRILEA
LGIAATPENAHRLLVELGYWPDHQNPHPGRQGVPLDSPQLEPGELQQEPRQDLTELTAWA
IDDEHSNDPDDAISFDGDRLWVHVADVAALVVPDSALDQEARSRGANLYLPETISHMLPP
PLTEMLGLGLQERSPALSIGLRLSEAAEPVDIAICASHIRATRISYAEANRRLEQEPFAS
IRSLTERYRARRQQAGAVGLDLPEVSLRVIDGRPQIKPQEKLDSREMVTDAMLMAGEAVA
SYCLQHQIAVPFAVQAPPDELRSPGSLAQMYAYRRFFKPTRSQTEPGLHSGLGLQRYVRA
TSPLRRYPDLLTHQQLRAHLAGREPLSLEQVSLRASQSDEGSFLRRRTERLSNQHWKLVW
LRQNADWQGEGVVVEQGERHMVVMIPELAFEARMRLKPEYSLDQAVRMKVREINLPEQLA
YFRLL
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgagtccggaaaagctgcaaatcaacgccctggtgctgtataagggccatcccgcacgc
attctagcccttgccgataaggtggaaatcgaactggagggaggcaagaccaaacgggta
cgcgacaaggacgtgatcctgctgcacccaggtccgctgcagcaactgcagggcctgccc
ggcgaggccgccgatgtcaccgaggcctgggagctgctggagggtgaagagagccgcttt
gccgatctgctggagctggtgttcgagcggcccggtccggcccaggcctggtcactctgg
ctgagcctggccgaggggctctggttcgagggtgatatcaacgccctcaggccgcgtagc
gccgaacagatcgccgctgatcgcgccgcccgcgaggaaaaggcgcgcaaggagcaggaa
tgggccgatctgctgcagcgcctgcaacagcggcagatactagcggaagatcggggccag
ctgagcgaggtggagcgcctggccctgggtcagctggcgcagagtcgtatcctggaggcg
ctgggcattgccgcgacgccggaaaacgcccaccgtctgctggtggagctgggctactgg
cccgatcatcaaaacccccatccagggcgtcagggcgtgccgctggactcgccccagctg
gagccgggggagctgcagcaggagccgcgccaggacctgaccgagctgaccgcctgggcc
atagacgacgaacacagcaatgacccggacgacgccatcagcttcgatggcgaccgcctc
tgggtgcatgtggccgatgtcgccgccctggtggtgccggactcggcgctggatcaggaa
gcccgcagccggggcgccaatctctatctgccggaaaccatcagccacatgctgccgccg
cccctgaccgagatgctgggactggggctgcaggaacgctcaccggccctatccatcggc
cttcgcctgtcggaggcggccgagcctgtggacatagccatctgcgccagccacatccgc
gccacgcgcatcagctatgccgaggccaaccgacgcctggagcaggagccctttgccagc
atccgcagcctgaccgagcgctaccgcgcccgtcgtcagcaggccggtgccgtggggctg
gacctgcccgaggtgagcctgcgggtgatcgacggcaggccgcagattaaaccccaggag
aagctggacagccgggagatggtcaccgacgccatgctcatggccggcgaggcggtggcc
agttattgtctgcaacaccagattgccgtgccctttgccgtgcaggccccgccggatgag
ttgcgcagccccggcagcctggcgcagatgtacgcctaccggcgtttcttcaagccgacc
cgctcgcagacggagccgggcctgcactccgggctgggcctgcagcgctatgtgcgcgcc
accagcccgctgcgccgctatcccgacctgctgacgcatcagcagctgcgtgcccatctg
gccgggcgcgagcccctgagcctggagcaggtctccctgcgtgccagccagtccgacgag
ggcagttttttgcgccgccgcaccgagcgcctgtccaaccagcactggaagctggtctgg
ctgcggcagaatgccgattggcagggcgagggggtggtggtggagcagggcgaacggcac
atggtggtgatgatccccgagctggcctttgaggcccgcatgcgcctcaaacctgaatac
agcctggatcaggcggtacggatgaaggtgcgcgagatcaatctacccgagcagctggcc
tattttcggttgttataa
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