Magnetovirga frankeli: D5125_16075
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Entry
D5125_16075 CDS
T11075
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
mfra Magnetovirga frankeli
Brite
KEGG Orthology (KO) [BR:
mfra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mfra03009
]
D5125_16075 (rlmD)
Enzymes [BR:
mfra01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
D5125_16075 (rlmD)
Ribosome biogenesis [BR:
mfra03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
D5125_16075 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
MTS
TRAM
RrnaAD
Methyltransf_11
PCMT
Cons_hypoth95
TRM5-TYW2_MTfase
Methyltr_RsmB-F
Methyltransf_23
Methyltransf_12
Methyltrans_SAM
Ubie_methyltran
Methyltransf_32
UPF0020
Methyltransf_15
Motif
Other DBs
NCBI-ProteinID:
QFY90851
UniProt:
A0A5Q0ENX8
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All DBs
Position
2385871..2387208
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AA seq
445 aa
AA seq
DB search
MGRKNRRRYPEGEFEITIENLSHDGRGVAHRDGKTLFIPGTLVGERVRFRYSARHRRFDL
GCLLEVLDASPDRVEPRCPHVAICGGCSLQHQSVAAQIRDKQQVLLEACKRIGKVEPGQV
LPPLIPDQHWGYRKKARLGVKWVAKKGRVLVGFREKGSGLIADIHSCAVLDARIGQRLDA
LSELIGGLSIPHRIAQIEVAIGDGEPVLVLRNLEPLTDSDQQRLCAFAQQQGLRMGMQPA
GPESILPLCGAGDLGLDYCIPQADVRIRFQPSDFTQVNSDINRQMIAQALALLDPGAEDR
VLDLFCGLGNFSLPLARRAGQVVGVEGDAGLVQRARQNAQDNGLANVAFYSADLYAPLGQ
APWLEQRFSKALLDPPRSGAAEVLELLPRLGVERLVYVSCYPATLARDAGVLVHQLGYRL
VSAGVMDMFPHTAHVESIALFQREG
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgggcagaaaaaaccgcagacgctaccccgagggcgagttcgagatcaccatcgaaaac
ctcagccacgatggccggggcgtggcccacagggacggcaagaccctgttcatccccggc
accctggtcggcgaacgggtgcgctttcgctacagcgcgcggcatcgacgctttgacctg
ggctgcctgttggaggtactggatgccagtccggaccgggtcgagccgcgttgtccccat
gtagcaatctgcggcggctgtagcctgcaacaccaatccgtagcggcgcagattcgggac
aagcagcaggtgctgctggaggcctgcaagcgcatcggcaaggtggagccggggcaggtt
ctgccgcccctgatcccggaccaacactggggctaccgcaagaaggcccggctgggggtg
aaatgggtggcgaagaagggcagggtgctggtgggctttcgggaaaagggcagcggcctg
attgccgatatccactcctgcgccgtgctggatgcgcgcatcggccagcgcctggatgcg
ctctcggaactgatcggcggcctgtcgataccccatcgcatcgcccagatcgaggtggcc
ataggggatggcgagccggtgctggtgttgcgcaatctggagcccctgacggactcggac
cagcagcggctctgcgcctttgcccagcaacaggggctacgcatgggtatgcaaccggcc
gggccggagagcatcctgcccctgtgcggcgctggtgacctgggcctggattattgcatc
ccgcaggcggatgtgcgcatccgcttccagccctctgatttcacccaggtaaacagcgac
atcaaccggcagatgatcgcccaggccctggcgctgctcgaccccggcgcggaagatcgg
gtactggacctgttctgcggtctgggcaacttcagcctgccgctggcgcgccgggctggc
caggtggtcggggtcgagggcgatgccggcctggtgcaacgggcacggcagaacgcgcag
gacaatggcctggcgaacgtcgccttctacagcgccgatctctacgcccccctggggcag
gccccctggctggagcagcgcttcagcaaggccctgctcgatcccccgcgcagcggggca
gccgaggtgctggagctgctgccccggctgggggtggagcggttggtctatgtgtcctgc
tatcccgccaccttggcgcgggacgcaggtgtcttggtacatcagttgggctatcgtctg
gtgagtgccggggtgatggatatgtttccccataccgcccatgtcgaatccattgccctg
tttcaacgggagggctga
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