Mycolicibacterium frederiksbergense: EXE63_09655
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Entry
EXE63_09655 CDS
T10436
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mfre Mycolicibacterium frederiksbergense
Pathway
mfre03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mfre00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EXE63_09655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mfre03021
]
EXE63_09655
03400 DNA repair and recombination proteins [BR:
mfre03400
]
EXE63_09655
Enzymes [BR:
mfre01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EXE63_09655
Transcription machinery [BR:
mfre03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EXE63_09655
DNA repair and recombination proteins [BR:
mfre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EXE63_09655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QIV81127
UniProt:
A0A6H0S515
LinkDB
All DBs
Position
complement(1369197..1373150)
Genome browser
AA seq
1317 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRNWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITAVDTEMRHNELSTLEAEMVVEKKAVEDQRDADLEARAQKLEAD
LAELERDGAKSDVRRKVRDGGEREMRQLRDRAGRELERLDEIWTTFTKLAPKQLIVDEVL
YRELIDRYGEYFEGAMGAESIKKLIETFDIDAEAESLRDTIKNGKGQKKLRALKRLKVVA
AFQMNRNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYFLTTEIPGDTGEYT
PAATDTPETGVYSSPAEAIMALDRGALSVRAKIKVRLTNQRPPADVEAQLFPEGWNHGDA
WIADTTLGRVLFNELLPKGYPFVNAQMFKKAQAAIINDLAERYPMIVVAQTVDKLKDAGF
HWATRSGVTVSMADVLVPPQKAEILERYEGEADSIEKQYQRGKLNHVERNGELVKIWQQA
TEEVGKALEAYYPEDNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEYIPRPIKSSFR
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCQTERGINVTL
AEKQEDGSLVRDQHIETSAYARTLATDAVDASGNVVIERGHDLGDPAIDALLAAGITEVK
VRSVLTCTTGTGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVT
GGADIVGGLPRVQELFEARVPKNRAPIADVTGRVQLEETDKFYKITIVPDDGGEEVVYDK
LTRRQRLKVFKHDDGSERLLSDGDHVTVGQQLMEGAADPHEVLRVQGPREVQIHLVREVQ
EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERSEFESENRRVVAEGNE
PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLMGLKENVIIGKLIP
AGTGIPRYRDIQVQPTEEARAAAYTIPSYEDQYYSPDFGQSTGAAVPLDDYGYSDYR
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
gtgctagacgtcaacttcttcgatgaactccgcatcggtctcgcgaccgcggacgacatc
cgtaactggtccttcggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
ccagagaaggacggcctgttctgcgagaagatcttcggacctactcgcgactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgtgccaaggtgcgccgtgagcggatgggccatatcgagctggccgcaccc
gtcacgcacatctggtacttcaagggtgttccgtcgcgcttgggctacctgctggacctg
gccccgaaggatctggaaaagatcatctacttcgcggcctacgtcatcaccgcggtcgac
accgagatgcgtcacaacgagctctcgaccctcgaggccgagatggtcgtcgagaagaag
gccgtcgaggatcagcgtgacgccgacctggaggcccgggcccagaagctcgaagccgac
ctggccgagctggagcgcgacggtgccaagtccgacgtgcgccgcaaggtgcgcgacggc
ggcgagcgcgagatgcgccagctgcgtgaccgtgccggccgtgagctggagcgtctcgac
gagatctggaccaccttcaccaagctggctcccaagcagctcatcgtggacgaggtgctg
taccgcgagctcatcgaccgctacggcgagtacttcgagggcgccatgggcgcggagtcg
atcaagaagctcatcgagaccttcgacatcgacgccgaggccgagagcctgcgcgacacc
atcaagaacggcaagggccagaagaagctgcgtgcgctgaagcggctcaaggtcgtcgcg
gcgttccagatgaaccgcaactcgccgatgggcatggtgctcgacgccgtgccggtgatc
ccgccggagcttcgcccgatggtgcagctggacggtggccgcttcgcgacctccgacctc
aacgacctgtaccgccgcgtgatcaaccgcaacaaccggctcaagcgactgatcgatctg
ggtgcgcccgagatcatcgtcaacaacgagaagcgcatgcttcaggagtcggtggacgcg
ctgttcgacaacggccgtcgtggacgtccggtcaccgggccgggcaaccgtccgctcaag
tcgctgtccgatctgctcaagggcaagcagggccggttccgtcagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtggtcggcccgcagctcaagctgcaccag
tgcggtctgcccaagctgatggctctcgagctgttcaagccgttcgtgatgaagcgtctc
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcgcatggtggaacgtcagcgt
ccccaggtgtgggatgtcctcgaagaggtcatcgccgagcacccggtgctgctgaaccgt
gcacccacgctgcaccgcctcggtatccaggccttcgagccgcagctggtcgagggcaag
gccatccagctgcacccgctggtgtgtgaggccttcaacgccgacttcgacggtgaccag
atggccgtgcaccttccgctgtccgcggaggcgcaggccgaggcccgcatcctgatgctg
tccagcaacaacatcctgtctcccgcgtcgggccgcccgttggccatgccgcgtctggac
atggtgaccggtctgtacttcctgaccaccgagatccccggtgacaccggcgagtacacc
ccggcggcgacggacaccccggagaccggcgtgtacagctccccggccgaggccatcatg
gccctggaccgtggtgcgctgtcggtgcgcgccaagatcaaggtgcggctgaccaaccag
cgtccgcccgccgacgtcgaggcacagctgttccccgagggctggaaccacggcgacgcc
tggattgccgacaccacgctgggtcgcgtgctcttcaacgagctgctgcccaagggctac
ccgttcgtcaacgcgcagatgttcaagaaggcgcaggccgcgatcatcaacgatctcgcc
gagcgttacccgatgatcgtcgtcgcgcagacggtggacaagctcaaggacgccggtttc
cactgggcgacgcgttcgggtgtgacggtctcgatggccgacgtgctcgttccgccgcag
aaggcggagatcctggagcgctacgagggcgaagccgactcgatcgagaagcagtaccag
cgcggcaagctcaaccatgtcgagcgcaacggcgaactggtgaagatctggcagcaggcc
accgaagaggtcggtaaggccctggaggcctactaccccgaggacaacccgatcatcacg
atcgtgaagtccggcgccacgggcaacctgacccagacccgcacgctcgcgggcatgaag
ggtctggtgaccaacccgaagggtgagtacatcccgcgtccgatcaagtcctcgttccgc
gagggcctgaccgtgctggagtacttcatcaacacccacggtgcccgtaagggtctggcc
gacaccgcgctgcgtaccgccgactcgggttacctgacccgtcgtctggtcgacgtgtcg
caggacgtcatcgtgcgtgagaccgactgccagaccgagcgcggtatcaacgtcaccctc
gccgagaagcaggaagacggctcgctggtccgcgatcagcacatcgagacgtcggcgtac
gcccgcacgctggccaccgacgcggtggacgcaagcggcaacgtcgtcatcgagcgcggc
catgacctgggtgacccggccatcgacgcgctgctggccgccggcatcaccgaggtgaag
gtccgctccgtgctgacctgcaccacgggcaccggcgtctgcgccatgtgctacggccgc
tcgatggccaccggcaagctcgtcgacatcggcgaggccgtcggtatcgtcgccgcgcag
tccatcggtgagcccggtacgcagctgaccatgcgtaccttccaccagggtggtgtcacc
ggtggcgccgacatcgtcggtggtctgccgcgtgtgcaggaactgttcgaggcccgcgtg
ccgaagaaccgtgccccgatcgccgatgtcaccggccgggtgcagcttgaggagaccgac
aagttctacaagatcaccatcgtccccgacgatggtggcgaggaagtcgtctacgacaag
ctgacccgtcgccagcgcctgaaggtgttcaagcacgacgacggttccgagcgtctgctc
tccgacggtgaccacgtcaccgtgggtcagcagctcatggaaggtgctgccgacccgcac
gaggtgctgcgtgtccagggcccccgtgaggtgcagatccaccttgtccgggaggtccag
gaggtctaccgggcccagggtgtgtcgatccacgacaagcacatcgaggtcatcgtgcgg
cagatgctgcgtcgcgtgacgatcatcgattccggtgccacggagttcctgcccggatcg
ctgaccgagcgcagcgagttcgagtcggagaaccgtcgggtcgtcgccgagggcaacgag
cccgcggccggccgtccggtgctgatgggtatcacgaaggcatcgctggccacggattcg
tggctgtcggcggcgtcgttccaggagaccactcgcgtgctgaccgatgcggcgatcaac
tgccgcagcgacaagctgatgggtctgaaggagaacgtgatcatcggcaagctgatcccg
gccggcaccggcattccccggtaccgggacatccaggtgcagccgaccgaagaggcccgc
gctgcggcgtacacgatcccgtcctacgaggatcagtactacagcccggacttcggacag
tcgaccggcgctgccgtgccgctggatgactacggctactcggactaccggtag
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