Mycolicibacterium frederiksbergense: EXE63_23255
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Entry
EXE63_23255 CDS
T10436
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mfre Mycolicibacterium frederiksbergense
Pathway
mfre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EXE63_23255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfre03019
]
EXE63_23255
03009 Ribosome biogenesis [BR:
mfre03009
]
EXE63_23255
Enzymes [BR:
mfre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EXE63_23255
Messenger RNA biogenesis [BR:
mfre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EXE63_23255
Ribosome biogenesis [BR:
mfre03009
]
Prokaryotic type
rRNA helicases
EXE63_23255
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
Cas3-like_C_2
CMS1
adh_short
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
QIV83478
UniProt:
A0A6H0S807
LinkDB
All DBs
Position
4151754..4153445
Genome browser
AA seq
563 aa
AA seq
DB search
MTSPDEPTPTAELTFADLQIHPAVLQAVTDVGYESPSAIQAATIPAMLAGSDVVGLAQTG
TGKTAAFAIPILSKIDPTSRHTQALVLAPTRELALQVAEAFGRYGQHLPGINVLPIYGGS
SYGPQLAGLKRGAQVVVGTPGRVIDHLEKGRLDLSHLDYLVLDEADEMLQMGFAEDVERI
LSDTPEYKQVALFSATMPPAIRKITSKYLQDAVEVAVKTKTATAENITQRFIQVDGRRKM
DALTRVLEVEEFDAMIIFVRTKQATEEVAEKLRARGFSAAAINGDIAQAQRERTIANLKA
GGAKGIDILVATDVAARGLDVDRITYVLNYDIPHDPESYVHRIGRTGRAGRSGTALLFVS
PRERHLLKSIERISRQKLIEIELPSVDDVNAGRVAKFNDSISDALNAPGIELFRRLIEDY
EKDHDVPIADIAAALALESRDGEAFLMTEPPPEKRREREERAPREDGPGRKKHSTRSDLA
TYRIAVGKRHKVMPGAIVGAIANEGGLHRSDFGHIAIKVDHSLVELPANLPGKVYKALEN
TRIQGILINLQPERSSKPRRKDS
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcgcctgatgaacccacccccactgccgagctgaccttcgctgacctgcaaatt
caccctgcggtgttgcaggccgtcaccgatgtcggctacgagtcgccgtcggcgatccag
gctgccacgattccggccatgctggccggctccgatgtggtcggcctggcccagaccgga
acgggcaagaccgccgccttcgccatccccatcctgtccaagatcgacccgaccagcagg
cacacccaggccctggtgctggcacccacccgtgagctggcactgcaggtcgccgaggca
ttcggccgttacggccagcacctgcccggcatcaacgtgctgcccatctacggcggctcg
tcgtatggtccgcagctggccgggctcaagcgcggggcacaggtcgtggtcggtaccccg
ggccgggtgatcgaccacctggagaagggtcgcctggacctctcgcacctggattacctg
gtgctcgacgaggccgacgagatgctgcagatggggttcgccgaggatgtcgagcgcatc
ctgtccgacacccccgaatacaagcaggtggcgctgttctcggcgaccatgccgccggcc
atccgcaagatcaccagcaagtacctgcaggacgccgtcgaggtcgcggtcaagaccaag
acggcgaccgcggagaacatcacgcagcgcttcatccaggtcgacggccgccgcaagatg
gacgcgctgacccgggttctggaggtcgaagaattcgacgcgatgatcatcttcgtgcgc
accaagcaggccaccgaggaggtcgccgagaagctgcgggcgcgcgggttctccgccgcc
gccatcaacggtgacatcgcgcaggcgcagcgcgaacggaccatcgccaacctcaaggcg
ggcggcgccaagggcatcgacatcctggtggccaccgatgtggccgcccgcggcctggat
gtcgaccgcatcacctatgtgctcaactacgacatcccgcacgacccggagtcctatgtg
caccgcatcgggcgcaccggccgggcgggccgctcgggcacggcgctgctgttcgtctca
ccccgggaacgccatttactcaagtcgatcgaacggatcagcaggcagaagctgatcgag
atcgaactgcccagcgtcgacgacgtcaacgccggtcgggtcgcgaagttcaacgattcg
atcagcgatgcgctcaacgcgccggggatcgagctgttccgcaggctcatcgaggactat
gaaaaagaccacgatgtgccgatcgccgatatcgccgccgcgctggcgctggagtcgcgg
gacggcgaagccttcctgatgaccgagccgccgccggagaagcgccgcgagcgcgaggaa
cgcgcgccacgcgaggacgggccgggacgcaagaagcacagcacccggagcgatctggcg
acctaccgcatcgcggtcggcaagcggcacaaggtcatgcccggtgccatcgtcggcgcc
atcgccaacgagggcggcctgcaccgcagcgacttcggccacatcgccatcaaggtcgat
cactcgctggtggaactgcccgccaacctgcccggcaaggtctacaaggcgctggagaac
acccgcatccagggcatcttgatcaacctgcaaccggaacggagcagcaagccccgtcgc
aaggactcgtga
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