Mycolicibacterium frederiksbergense: EXE63_23635
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Entry
EXE63_23635 CDS
T10436
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
mfre Mycolicibacterium frederiksbergense
Pathway
mfre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EXE63_23635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mfre03021
]
EXE63_23635
03019 Messenger RNA biogenesis [BR:
mfre03019
]
EXE63_23635
Transcription machinery [BR:
mfre03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
EXE63_23635
Messenger RNA biogenesis [BR:
mfre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
EXE63_23635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
AAA_25
NACHT
Fungal_virus_P2_C
VWA_2
AAA_22
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
QIV83542
UniProt:
A0A6H0S7G9
LinkDB
All DBs
Position
4238976..4240985
Genome browser
AA seq
669 aa
AA seq
DB search
MTDTDLFTASDSGEAAADSAAVDSGKAARSAGARGGRSGSLTSMLLPDLRALAGEVGVKG
TSGMRKGDLIAAIKERRGEGNGGAPAPAAAPKAAEAAPEAESAPAAPQADAGAAPQQSNP
QRRERRSAARQTGAPEGQKAQDANGAKAENEGAQDSARSEKPDNRNADNAGNRNADNRGA
ENRGVDNSEARSETRESRPPRNSEGGDQQGGGQQNRNSGGGNNSGGGNANNSNNNNDDGD
DRQGRRGRRFRDRKRRGERGDGGGDRGDRGDRGDRDTELREDDVVQPVAGILDVLDNYAF
VRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAVRVAREGESSGGGNNPRQKFNPLVRL
DTVNGGPVENAKNRPDFQKLTPLYPNQRLRLETTPDRLTTRVIDLIMPIGKGQRALIVSP
PKAGKTTIMQDIANAITKNNPECHLMVVLVDERPEEVTDMQRSVVGEVIASTFDRPPSDH
TQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKR
FLGAARNIEFGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVD
VNPSGTRKDELLLGADEFAVVHKLRRVLSGLDPHQAIDLLMSQLRKTKTNYEFLVQVSKN
TPGGNSDND
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
gtgactgatacggacctcttcacggcaagcgacagcggcgaagcagccgcagattccgct
gccgtggattcaggcaaggccgcgcggagcgcaggcgcacgcggcgggcgttccggctcg
ctgacgtcgatgctgctcccagacctgcgcgcgcttgccggtgaagtaggtgtcaagggc
acctcgggcatgcgtaagggcgatctgatcgccgccatcaaggaacgtcgcggtgagggc
aacggcggtgcacctgcacctgctgcggcacccaaggccgccgaagcggccccggaggcg
gagtcggcaccagccgcgccgcaggccgacgccggtgcggcgccgcagcagagcaacccg
cagcgccgtgagcgccgcagcgctgcgcgccagaccggtgcgcccgaaggccagaaggcg
caggacgccaatggtgccaaggccgagaacgagggcgcgcaggattccgcgcgctccgag
aagcccgacaaccgcaatgccgacaacgccggcaaccgcaatgcggacaaccgcggtgcc
gagaaccgcggtgtcgacaactcggaagcccgctcggagacgcgcgagagccgtccgccc
aggaactcagagggcggcgaccagcagggcggcggccagcagaaccgcaacagcggtggc
ggcaacaacagtggcggcggcaacgccaacaactcgaacaacaacaatgacgacggtgac
gaccgccagggccgtcgcggccggcggttccgtgaccgcaagcgccgcggggagcgtggc
gatggtggcggcgatcgcggagaccgcggcgatcgcggagaccgcgacaccgaactgcgc
gaggacgatgtcgtccagccggtggccggcattctcgatgtgctggacaactacgcgttc
gtgcggacctccggctacctggcaggccccaacgacgtctacgtgtcgatgaacatggtg
cgcaagaacggtctgcgccgcggcgacgcggtgaccggtgcggtgcgggtggcccgcgag
ggtgagagcagtggcggcggcaacaacccgcgccagaagttcaacccgttggtccgcctg
gacaccgtcaacggtggcccggtggagaacgccaagaaccggcccgacttccagaagttg
accccgctgtacccgaaccagcggctgcgcctggagaccactccggaccgcctcaccacc
cgcgtgatcgacctgatcatgccgatcggtaagggtcagcgcgcgctgatcgtgtcaccg
cccaaggccggtaagaccacgatcatgcaggacatcgcgaacgcgatcaccaagaacaac
ccggaatgccatctgatggtcgtgctcgtcgatgagcgcccggaagaggtcaccgatatg
cagcgttcggtcgtcggcgaggtcatcgcctcgacgttcgaccgtccgccgtcagatcac
acccaggccgccgaactggccatcgagcgggccaagcgcctggtcgagcagggcaaggac
gtcgtggtgctgctggattcgatcactcgcctgggccgcgcgtacaacaatgcgtcgccg
gcatcgggtcgaatcctgtccggtggcgtcgactcgaccgcgctgtatccgcccaagcgt
ttcctgggcgcggcgcgcaacatcgagttcggtggatcgctgacgatcatcgccacggcc
atggtcgagaccggctccaccggtgacaccgtgatcttcgaggagttcaagggcaccggt
aacgccgagctcaagctggaccgaaagatcgccgagcgccgcgtgttcccggccgtcgac
gtcaacccgtcgggtacccgcaaggacgagttgctcctgggtgccgacgagttcgcggtc
gtacacaagctgcgtcgggtgctctcgggtctggatccgcatcaggccatcgacctgctg
atgagccagctgcgcaagaccaagaccaactacgagttcctggtccaggtctccaagaac
acccccggtggaaacagcgacaacgactga
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