Methanocaldococcus sp. FS406-22: MFS40622_0248
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Entry
MFS40622_0248 CDS
T01175
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K03725
putative ATP-dependent RNA helicase [EC:5.6.2.-]
Organism
mfs
Methanocaldococcus sp. FS406-22
Brite
KEGG Orthology (KO) [BR:
mfs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfs03019
]
MFS40622_0248
Messenger RNA biogenesis [BR:
mfs03019
]
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Others
MFS40622_0248
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5814
DEAD
Helicase_C
ResIII
Helicase_dom4_arc
Motif
Other DBs
NCBI-ProteinID:
ADC68944
UniProt:
D3S7D4
LinkDB
All DBs
Position
complement(238909..241335)
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AA seq
808 aa
AA seq
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MLIVRKPKKKKDEIEIVKVDGKIEDGIEIKNNQKIFANYKKVGDKYKLYRCRVGDKLIQP
SKVLELLKSDKIYILKENEGDIEEILKSYNLKFEYIELCPFCLLKNIYKRLTRNNRCKYG
NLEICISCGVNEIKEEVKISEEFIEKFLRRFKDVDKVLSLLRIKNPLDKPELTRYDIITG
SEEDKIENYKIDELDIPKELKEIIKSRGINELLPVQTLSVKAGLLKGEDLLIVSATSSGK
TLIGELAGIKNLVETGKKFLFLVPLVALANQKYLEFKERYEKLGFKVSLRVGLGRIGKKV
DVETSLDADIIVGTYEGIDYLIRTKRLKDIGTVVIDEIHSLNLEERGARLDGLIGRLRFL
FKDTQKIYLSATIGNPKELAKQLGAKLVLYNGRPVPLERHIIFCKNDFAKLNIIKEIVKR
EWQNISKFGYRGQCLIFTYSRKRAEHLAKSLKAKGIKAEFYHGGMEYIRRRKVEDDFANQ
KIQCIVTTAALSAGVDFPASTVILESLAMGGDWLNPAEFQQMCGRAGRKGMHEIGKVYLL
VEIGKKYHAKMENTEDEIAFKLLNAVPEDVRVEYSEDEEEEQILATISAGINKRQDIDRV
PYIGRAFSLNKILGNLENYGMIKPQNEIKLTNYGSAVAISFLYPKIAEKIKEGIIENKEL
IKLITEIMPFENVYLSNNLKIKLSKILNINVPSRFFDALEVIKEGMEKIRDKKLKEDLTL
IIMEFEGVEVEEKILEMIINLRISGKTPGQISKTLYEEFKIQTYSGDIYYYLEQLLNLLD
AIERIARIFNKRYAEKVKELKEKIENPK
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgcttatagttaggaagccaaaaaagaaaaaggatgaaattgaaattgttaaagtagat
ggaaaaatagaggatggaatagagattaaaaataaccaaaagatatttgcaaattacaaa
aaagttggagataaatacaaattatatagatgtagagtaggggataagttaattcagccc
tctaaggttttggagttgttaaaatctgacaaaatatatatattaaaagaaaatgaggga
gatatagaggagattttaaaatcatacaatttaaagtttgaatacatagagctttgtccc
ttttgcttattaaaaaacatttacaaaagattaacaagaaataatagatgtaagtatgga
aatttggaaatctgcataagttgtggagttaatgaaattaaagaggaagtaaaaattagt
gaagaatttatagagaaatttttgagaagatttaaagatgttgataaagttctctcttta
ttaagaataaaaaatccattagataaaccggaattaacaagatatgatattataacaggt
agtgaagaagataagattgaaaattacaaaatagatgaattagatattccaaaagaactt
aaagagataataaagagtagaggcattaatgagcttttacctgttcaaacactatcagtt
aaggcaggtttgttaaaaggagaggatttactaattgtttcagcaacctcatctggaaag
acgttaattggagagttagcaggtattaaaaatttagttgaaactgggaagaagtttcta
tttttagttcctttagttgctttagcaaatcaaaaatacttagaatttaaagaaagatat
gaaaaattaggttttaaagttagtctaagagttggattagggaggattggaaaaaaagtt
gatgttgaaacatcattagacgcagatatcatagttggaacttacgagggaattgattat
ttaattagaactaaaagattaaaggatattggaacggtagttattgatgaaatccactct
ttaaatttagaggaaagaggggcaagattggatggtttaattggtagattaagattttta
tttaaagatactcaaaaaatatatttatcagcgacaattggaaatccaaaggaattagct
aaacaattgggagctaaattagttttatacaatggaagacctgtcccattagaaagacat
ataattttctgcaagaatgactttgctaaattaaatatcattaaagaaattgttaaaaga
gaatggcagaacatttcaaaatttggatatagagggcagtgcttaatcttcacatattca
agaaagagagctgagcatttagctaaatctttgaaagcaaagggaattaaagcagagttt
taccatggaggaatggagtatataagaagaaggaaagttgaggatgattttgcaaatcaa
aaaatccaatgtattgttacaactgccgctttatctgctggtgttgattttcctgcttca
acagttatcttagagagcttagctatgggcggtgactggttaaatccagcagaattccag
cagatgtgtggaagagctggaagaaagggaatgcatgaaattgggaaagtttatctttta
gtagagattgggaaaaagtatcatgcaaagatggaaaataccgaggatgagattgccttt
aaactattgaatgcagttcctgaagatgttagagttgagtatagtgaagatgaggaggag
gagcagatattagccacaatttcagctggaataaataaaaggcaggatatagatagagtc
ccatatattggaagggctttttctttaaacaaaattttaggtaatttagagaattatgga
atgataaaaccccagaatgaaataaaactaacaaattatggaagtgcagttgctatctca
ttcttatatccaaagattgccgaaaaaattaaggagggaattattgagaacaaagaactc
attaaattaatcactgaaattatgccttttgaaaacgtctatctttcaaacaatttaaaa
ataaagctttcaaaaattttgaatataaatgttccttcaaggttctttgatgctttagag
gttattaaggagggaatggaaaaaattagagacaaaaaattaaaagaggatttgacttta
attattatggaatttgagggggttgaagttgaggagaaaattttagagatgattattaat
ctaagaatttcaggaaaaactcctggacagatatcaaagactttatatgaggagtttaag
atacaaacatactctggggatatttactactacttagaacagttattgaatctcttagac
gctatagagaggatagcaaggatatttaataagaggtatgctgaaaaagttaaagaatta
aaagaaaaaatagaaaatcctaaatag
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