Methanocaldococcus sp. FS406-22: MFS40622_0790
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Entry
MFS40622_0790 CDS
T01175
Name
(GenBank) nucleic acid binding OB-fold tRNA/helicase-type
KO
K07466
replication factor A1
Organism
mfs
Methanocaldococcus sp. FS406-22
Pathway
mfs03030
DNA replication
mfs03420
Nucleotide excision repair
mfs03430
Mismatch repair
mfs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mfs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MFS40622_0790
03420 Nucleotide excision repair
MFS40622_0790
03430 Mismatch repair
MFS40622_0790
03440 Homologous recombination
MFS40622_0790
03460 Fanconi anemia pathway
MFS40622_0790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mfs03000
]
MFS40622_0790
03032 DNA replication proteins [BR:
mfs03032
]
MFS40622_0790
03400 DNA repair and recombination proteins [BR:
mfs03400
]
MFS40622_0790
Transcription factors [BR:
mfs03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
MFS40622_0790
DNA replication proteins [BR:
mfs03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
MFS40622_0790
DNA repair and recombination proteins [BR:
mfs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
MFS40622_0790
MMR (mismatch excision repair)
MFS40622_0790
DSBR (double strand breaks repair)
HR (homologous recombination)
MFS40622_0790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_anti-codon
CDC24_OB3
REPA_OB_2
Rep_fac-A_C
SHLD2_OB1
DUF3127
DUF5689
DUF7565
Motif
Other DBs
NCBI-ProteinID:
ADC69474
UniProt:
D3S3R0
LinkDB
All DBs
Position
788832..790778
Genome browser
AA seq
648 aa
AA seq
DB search
MVMIMIGDYERFKKLKKKVAEALNISEEELDRMIDKKIEENGGIILKDAALMMIAKEHGI
YGEEKDDEEFLISDIEEGQISVEITGVVTDVSDIKTFKRRDGSLGKYRRITIADKSGTIR
MTLWDDLAELDVKVGDVIKIERARARKWRNNLELSSTSETKIEKLENYEGELPEIKDIYD
IGELNPGMTATFEGEVISALPIKEFKRADGSVGKLKSFIVKDETGSIRVTLWDNLTDIDV
GRGDYVRVKGYIRDGYYGGLECTANYVEILKKGEKKEAEEVNIEDLTEYEDELVSVKGRV
IAISSKKSVDLDGEIARVQDIILDNGTGRVRISFWRGKTALLENIKEGDLVRITNCRVKT
FYDREGNKRADLVATVETEIIKDESIEAPEYELKYCKIEDIYNRDVDWNDINLIAQVVED
YGVNEIEFEDRVRKVRNLLLEDGTGRIRLSLWDDLAELDVKEGDIVEILHAYAKERGDYI
DLVIGKYGRIIINPEGVEIKSNRKFIADIEDGETVEIRGAVVKILSDTLFLYLCPNCRKK
VVEIDGIYNCPICGDVEPEEVLRLNFVVDDGTGTLLCRAYDRRVEKMLKMGREELKNLTI
EMVEDEILGEEFVLYGNVRVENDELIMVVRRVSDVDVEKEIRILEEME
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atggtgatgattatgataggagattatgagagatttaaaaaacttaaaaaaaaggttgct
gaagcattaaatattagtgaagaggaattggataggatgattgataaaaaaattgaagaa
aatggaggaataatattgaaagatgctgcactaatgatgattgcaaaagaacatgggatt
tatggggaagaaaaagatgatgaggaatttttaattagcgatattgaagaagggcaaata
agtgttgagataactggagtcgtaactgatgtttcagatataaaaacattcaaaaggaga
gatggaagtttagggaaatacagaagaattacaatagcagataagtcaggaactataaga
atgactttatgggatgatttggctgaattagatgttaaagttggggatgttattaaaatt
gaaagagcaagagcaagaaaatggagaaacaatttagaattgagctcaacatctgaaact
aagattgaaaaattagagaattatgagggagaacttccagagattaaagacatatatgat
ataggagagctaaatcctggaatgactgcaacatttgaaggagaagttatctcagctctc
ccaataaaagaatttaaaagagctgatggtagtgttgggaaattaaaatcatttattgtt
aaagatgaaactgggagtataagagttactttatgggataatttaacagatatcgatgtt
ggtagaggagattacgtcagagttaaaggttatataagagatggttactatggagggttg
gaatgcacagcgaattatgtagaaatattgaaaaaaggagaaaagaaagaagctgaggaa
gtaaatattgaggatttaacagaatatgaagatgagttagttagcgttaaaggtagagtt
atagctataagtagtaaaaaaagtgtagatttggatggagaaatagcaagggttcaagac
attatattggataatggcactggaagagtgagaatttcattttggagaggcaaaactgct
ttattagaaaatataaaagaaggagatttggtaagaataacaaattgtagggtaaagaca
ttttatgatagggaaggaaataaaagagctgatttagtggcaactgtagaaacagaaatt
attaaagatgagagcattgaagccccagagtatgagctaaaatattgcaaaattgaagat
atctacaacagggatgttgattggaatgatataaacttaatagcccaagttgttgaagat
tatggagttaatgaaattgaatttgaagatagagttagaaaagtaagaaatttgttgtta
gaggatggaactggaagaataaggttgagtttatgggatgatttggctgaattagatgtt
aaagaaggagatattgtagaaattttacatgcctatgctaaggagagaggagattatata
gatttagttattggaaaatatggaaggataattataaatccagaaggtgttgagataaaa
agtaatagaaagttcatagctgatattgaagatggggaaactgttgagattagaggggct
gtagttaagatattgagcgacactctcttcctttacctatgtccaaattgtagaaagaag
gttgtagagattgatggaatttataactgccctatttgtggagacgttgaaccagaagag
gttttgagattaaattttgttgtagatgatggaacaggaactttattatgtagggcttat
gatagaagagttgagaagatgttgaaaatggggagagaggagttaaagaacttaactata
gaaatggtagaggatgaaatattaggggaggagtttgttctatatggaaatgttagggta
gagaatgatgaattgattatggttgttagaagagttagtgatgtagatgttgagaaagaa
ataagaatattggaggagatggaatga
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