Methanocaldococcus sp. FS406-22: MFS40622_1119
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Entry
MFS40622_1119 CDS
T01175
Name
(GenBank) sigma 54 interacting domain protein
Organism
mfs
Methanocaldococcus sp. FS406-22
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ArsP_1
DUF5805
Sigma54_activ_2
AAA_16
RPA_C
MCM_WH_arc
Motif
Other DBs
NCBI-ProteinID:
ADC69799
UniProt:
D3S4N5
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Position
complement(1104840..1107185)
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AA seq
781 aa
AA seq
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MSEVIHNIRELLKNPIFKKFFNELREKHAETIKDLVEVIPSMGTLKLHYKVVLASEDNIK
KYYQSLDFYFPEIIEQHFFTKYQVFIDFDEESKWYGLIDLETLIKVHEWDYNQAIEKARK
EGKTIKKSFEEFFVDSILSLLKDTKLHGISKFEDVPIVIKFRDNLYGDVNTWRLIEIETP
KMTINYHLKIDDNNLVYLHAIKTVEKDGQVITAEENIPVFHLDKCEKIYDPIEDKTVFYV
AGWKLQGSEEKYVEIIDINDIGQLLSSPVINLCKKYKELYMELKNVLKYLISQKAKDCIK
TEGFAIISRNGRLIIPKRYKTPDTVFCENLEHLDRILSKNIDNLIREDLIKYLALFNKTH
NLTIIGAFIASHLIHIIKPKIVSPVFIWGDSGVGKTSIAMLLSYVNPSSSQTTSHQLMQK
ISGFRCGLVYFDEKIDYSAQLTQDLKYSATNYGYLHRISHNKKYIANVMFLATSNPQPKF
KTKGLEDLKGLLRRAIFLKVIKELDEITDKDINEAYEVLDIYRDDLIKILLDEIISFSEK
EIKEIYKQFTVREKYKLLLTGLELWKTICKKYNIELNIDYDNLIKRFEESEKEVLGFGDI
SLLELIKGAIIEDAIHIARTLGIECDTDMLDMVTERNVIKSLLASKGYSIYQKDNKYYII
LSVRGFKNLTNKIKELPDLDNKRDIESYLRQNGIEFEYKRTTIHGITCRAFFIELNDMTA
ESGKTLEEKVLNIIKESGEIGFDELKEKAGLCDEKLEEIIDKLKKLGDIQEVRFQTYKIL
E
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaagtaattcacaatattagagagctcctgaaaaatccaatatttaaaaaattt
tttaacgaactaagagaaaaacatgcagagacaataaaagatttagttgaagttattcct
tctatgggaactctaaaacttcattataaagtagtattggcttctgaagataacattaaa
aagtattaccaaagtttagatttctatttcccagagattatagaacaacatttctttacc
aaatatcaggtatttattgatttcgatgaagagtccaaatggtatggtttaatagatttg
gaaactctaataaaagttcatgagtgggactacaaccaagctatagaaaaagccagaaaa
gaaggaaaaactattaagaaaagttttgaagaattttttgtagactcaatattatcacta
ctgaaagatacaaaattacatggaataagtaaatttgaagatgttccaattgtaataaag
tttagagacaatctatatggggatgtaaatacttggagacttattgagattgaaactcca
aaaatgacaattaattatcatctaaaaattgatgacaataatcttgtttatttacatgca
ataaaaaccgtagaaaaagatggacaagttataactgctgaagaaaatattccagtgttc
catttagacaagtgtgaaaagatttatgacccaatagaagacaaaacagtattttatgta
gctggatggaaattacaaggtagtgaagaaaaatatgttgaaatcatagacatcaatgat
ataggtcaattactaagttctccagttattaacctgtgtaagaaatacaaagaactatat
atggaattaaaaaatgtcttaaaatacttaatctctcaaaaggctaaagattgtataaaa
actgaaggttttgccataatttctcgtaatggacgcttaattatcccaaaaagatataaa
actcctgataccgtattttgtgaaaatttagaacatttagatagaatattatcaaaaaac
attgataatttaattagagaggatttaataaaatatcttgcattgtttaataaaacacat
aacttaacaatcataggagcattcattgcaagtcatttaatacatattataaaaccaaaa
attgtttctcccgtcttcatctggggggatagtggcgtaggaaagacaagtattgctatg
ttgcttagctatgtaaatccttcaagttctcaaactacaagccatcaattaatgcaaaaa
atttctgggtttagatgtggattagtttattttgatgaaaaaattgattattcagcacaa
ttaacccaagatttaaagtattcagctactaattatggatacttgcacagaatcagccat
aacaaaaaatatattgcaaatgtcatgtttttagcaacatcaaatccccagccaaaattc
aaaacaaaagggcttgaagacttaaaggggcttctaaggagggcaatatttttaaaagtc
ataaaagagcttgatgaaataacagacaaagacattaatgaagcttatgaagtgttggac
atatacagggatgatttgattaaaatactgcttgatgaaataatatcattctctgaaaaa
gaaattaaggaaatttataaacaatttaccgtgagggaaaaatataaattactgcttaca
ggtcttgaactctggaaaacaatttgtaagaaatataatattgaattaaatatagattat
gacaaccttattaaaaggtttgaagaaagtgaaaaagaagtattgggatttggagacata
agcttattagaattaataaaaggagcaataattgaagatgcaatacatatagcaagaaca
ttagggatagaatgtgatacagacatgttagacatggttactgaaagaaatgtgataaaa
tcactactcgcatctaaaggatattcaatatatcaaaaagacaataaatattatataata
ctctcagttagagggtttaaaaacctaacaaataaaatcaaagaactacccgatttagat
aataagagagatattgagagctatttaaggcagaatggcattgagtttgaatataaaaga
acgacaatccatggtataacttgcagagcattctttatagaacttaatgacatgactgct
gaaagtggaaaaactttagaagaaaaagttttaaatattataaaagaaagtggagagatt
ggatttgatgaattaaaagaaaaggcaggattatgtgatgaaaaattagaagaaataatt
gacaaattgaaaaagttaggagatatacaagaagtaagattccaaacatacaaaatttta
gaataa
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