Methanocaldococcus sp. FS406-22: MFS40622_1332
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Entry
MFS40622_1332 CDS
T01175
Name
(GenBank) phosphoesterase RecJ domain protein
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
mfs
Methanocaldococcus sp. FS406-22
Pathway
mfs03410
Base excision repair
mfs03430
Mismatch repair
mfs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mfs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MFS40622_1332
03430 Mismatch repair
MFS40622_1332
03440 Homologous recombination
MFS40622_1332
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mfs03400
]
MFS40622_1332
DNA repair and recombination proteins [BR:
mfs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
MFS40622_1332
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
MFS40622_1332
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MFS40622_1332
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
DHH_CID
Cauli_AT
Motif
Other DBs
NCBI-ProteinID:
ADC70009
LinkDB
All DBs
Position
complement(1315544..1316839)
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AA seq
431 aa
AA seq
DB search
MEKLKEIEKVTKAIKEKILNHYGYIRVITHHDTDGLSSGGILAKMLMRTNKLFHLTVVEH
LSKEVIEKLAKENEVNKPLFIFADMGSGQIEDIIKHNFNAIILDHHPPVIKESFVNENII
QLNPHIFGVDGAREITASGVCYLVAREFGYYDLSVLAIVGIIGDMQYNPLLGLNKFIVNE
AREYRYVKIMNDIVYNIYNVEIYKAIAYCTKPYIPELASEGKAFKFLKDIGIDPNKKELD
DTDKKKLLSAIIFKYPKIENLMIDRYLIEHKVRDAFLLSEMLNAVGRNGLFAVGIGICLE
DDECIKIGNQILWEYKKNLINELKSVKLKKLNNIYYFEGKKGMIGIIASILVDDRPVIGY
HIEGEIAKFSARGNRDLVNRGLNLSIAMSVAKEFGGNGGGHDVASGAVVPKDKIMEFLKR
VDEIIGEQLKK
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaactcaaagagatagaaaaagtaactaaagcaattaaggagaagatattaaat
cactatggatatattagggttataactcatcacgacacagatggattgagtagtggagga
attttagctaagatgctaatgaggacaaacaaattatttcatttaactgttgttgaacat
ctttctaaagaagttattgaaaaattagctaaggaaaatgaagtaaataaacccctcttt
atatttgcagatatgggaagcggacaaatagaagatataataaaacataatttcaatgca
ataatcttagaccaccatccaccagttataaaggagagctttgttaatgaaaacataatt
cagctaaatccccacatctttggagtggatggagcaagggagataacagcaagcggagtt
tgctatttagtggcgagagagtttggctactatgatttaagcgtcttagcaatagttggg
attattggagatatgcaatacaatccccttttgggcttaaacaagtttatagtgaatgag
gcaagggagtatagatatgttaagataatgaacgatattgtctataatatctacaacgta
gaaatctacaaggcaattgcttactgcacaaaaccttacatcccagagttggcttctgaa
ggaaaggcatttaagtttttaaaagatattggtattgacccaaataaaaaagaattggat
gatacagacaagaagaaattattatcagcaataattttcaaatatccaaagattgaaaat
ttaatgattgataggtatttgattgaacataaggttagagatgcctttttattgtcagag
atgttaaatgccgttggtagaaatggtttatttgctgtgggtattggaatatgcttagag
gacgatgagtgtataaagattggcaaccaaattttatgggagtataaaaagaacttaatt
aacgagcttaaaagcgtcaaactaaaaaaactaaacaacatctattactttgagggcaaa
aaagggatgattggaatcatagcatctatattggttgatgataggccagttattggttat
catattgagggagagatagccaagttttcagcaagaggaaatagagatttagtaaataga
gggttaaatttaagtatagcaatgtctgttgctaaggagtttggtggtaatggaggaggg
catgatgttgcctctggtgctgtagttccaaaagataagattatggagtttttaaagaga
gttgatgagattattggagagcagttaaagaaataa
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