Methanocaldococcus sp. FS406-22: MFS40622_1514
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Entry
MFS40622_1514 CDS
T01175
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mfs
Methanocaldococcus sp. FS406-22
Pathway
mfs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MFS40622_1514
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfs03019
]
MFS40622_1514
03009 Ribosome biogenesis [BR:
mfs03009
]
MFS40622_1514
Enzymes [BR:
mfs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MFS40622_1514
Messenger RNA biogenesis [BR:
mfs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MFS40622_1514
Ribosome biogenesis [BR:
mfs03009
]
Prokaryotic type
rRNA helicases
MFS40622_1514
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
AAA_30
UTP25
CpsB_CapC
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ADC70186
UniProt:
D3S5S2
LinkDB
All DBs
Position
1485409..1486497
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AA seq
362 aa
AA seq
DB search
MNFNELNLSDNILNAIKNKGFEKPTDIQMKVIPLFLNDKGNIVAQARTGSGKTAAFAIPL
IELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNAN
IVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFVEDVERILNACNRDKRILLFS
ATMPREILNLAKKYMGDYSFIKAKINANIEQSYIEVNENERFEVLCRILKNKDFYGLVFC
KTKKDTKELANMLRDIGFKAGAIHGDLNQSQREKVIRLFKQKRIKILIATDVMSRGIDVN
DLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLKYIERMTKLKIRKLK
FG
NT seq
1089 nt
NT seq
+upstream
nt +downstream
nt
atgaattttaatgaattaaatttgtcagataatatcctaaatgccattaagaataaaggt
tttgaaaagccaacagacatacagatgaaggttattccgttatttttaaatgataaaggg
aatattgtagctcaagcaagaactgggagtggaaaaactgcagcgtttgcaattccatta
attgagctcgttaatgaaaacaatggaatagaggcaattatcttaactccaacaagggaa
ttagctatacaagtggctgatgaaatagagtcattaaaaggcaataaaaatttaaagata
gctaaaatttatggaggaaaagccatttatccacaaattaaagctttaaaaaatgcgaat
atagttgttggaactccaggaagaattttagaccacataaacagaggaactttaaaccta
aaaaatgttaaatactttatattggatgaggcagatgaaatgctcaatatggggtttgtt
gaggatgttgaaagaattttaaatgcttgtaatagggataaaaggattttattattctct
gccactatgccaagggagatattaaatttggctaaaaagtatatgggagactatagcttt
ataaaagctaagataaatgcaaatattgagcagagttatatagaagttaatgaaaatgag
agatttgaagttttatgtagaattttaaaaaataaagacttttatggactggttttttgt
aaaactaagaaagacacaaaagaattggcaaatatgctaagagatattgggtttaaagct
ggggcaattcatggtgatttaaatcaatctcaaagagagaaagttataaggctatttaaa
caaaaaagaattaagattttgattgccactgatgttatgagtaggggaatagacgttaat
gatttaaactgtgtgattaactatcatctcccacaaaatcctgaatcttatatgcataga
attggaagaactgggagggctggaaaaaaaggaaaggctatatcaattatcaacagaaga
gaatacaaaaaactgaaatatatagagagaatgacaaaactgaagattagaaaactaaaa
tttggatag
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