Mycolicibacterium fortuitum: XA26_43600
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Entry
XA26_43600 CDS
T04105
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
mft
Mycolicibacterium fortuitum
Pathway
mft03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mft00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XA26_43600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mft03021
]
XA26_43600
03019 Messenger RNA biogenesis [BR:
mft03019
]
XA26_43600
Transcription machinery [BR:
mft03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
XA26_43600
Messenger RNA biogenesis [BR:
mft03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
XA26_43600
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
AAA_25
NACHT
AAA_22
VWA_2
S1CSD-TOTE-2
CDC27
Motif
Other DBs
NCBI-ProteinID:
ALI28161
LinkDB
All DBs
Position
complement(4476976..4478967)
Genome browser
AA seq
663 aa
AA seq
DB search
MTDTDLFTADNANGTGDLPNAVTSESTETTDTAAARRTSSARPASLSTMVLPELRALAKE
IGVEGASGLRKSELIAAIRAHRGESNGASAEAKQAPADAQSDAGTEAAEQPAPRRRERRG
SSRQAGAPAADAVKDESAAEADTKAADDTKAAESAESTAEPQEKPAKQDKRERQERRDKR
EQADTDKDADKADSKSENKQDDKRDQKQDRDQKQDKGQGREQSDQSDNQQNRGGNSNADD
DGDGDGRQGRRGRRFRDRDRRRRGERGSEGGNETELREDDVVQPVAGILDVLDNYAFVRT
SGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAVRVPREGEGGGNNPRQKFNPLVRLDSVNG
GPVEAAKNRPDFTKLTPLYPNQRLRLETTPERLTTRVIDLIMPIGKGQRALIVSPPKAGK
TTIMQDIANAITKNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTQAAE
LAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAA
RNIEHGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSG
TRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVSKTAPGSM
DVD
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
gtgacagatacggacctcttcacggctgacaatgccaacggcaccggggatttgcccaat
gccgtgacttctgagagcaccgagaccactgacaccgcggccgcgcggcgcacttcgagc
gcccggcccgcgtcgctgtccaccatggtgctgcccgagctgcgggccctggccaaggaa
atcggcgtcgaaggcgcgtccggtttgcgtaagagtgagctgatcgcagctattcgcgcc
caccgcggcgaatccaacggcgcctccgccgaggccaagcaggcgcccgcggacgcccag
tcggacgccggtaccgaggctgccgagcagcccgcgccccgtcgtcgcgagcgtcggggt
tcatcgcgccaggccggtgctccggctgccgacgcggtcaaggatgaatcggccgccgaa
gccgacaccaaggctgccgacgacaccaaggctgccgagagcgccgagtccaccgccgag
ccgcaggaaaagcccgccaagcaggacaagcgggaacggcaggagcggcgcgacaagcgc
gagcaggccgacacggacaaggacgccgacaaggcggacagcaagtccgagaacaagcag
gacgacaagcgcgatcagaagcaggaccgcgaccagaagcaggacaagggccagggccgc
gagcagtccgatcagtccgacaaccagcagaatcggggcggcaactccaacgccgatgac
gatggtgacggagacggcaggcagggccgccgcggccgccggttccgcgaccgtgatcgt
cgccgccgcggagagcgtggctccgagggcggtaacgagaccgagctgcgtgaagacgat
gtcgtgcagccggtcgccggcatcctcgacgtgctggacaactacgcgttcgtccgcacc
tcgggttatctggccgggccgaacgacgtctatgtgtcgatgaacatggtccgcaagaac
gggctgcgccgtggtgacgcggtcaccggggccgtccgggtaccccgcgagggagagggc
ggcggcaacaacccgcggcagaagttcaacccgctggtccgcctggacagcgtcaacggc
ggtccggtcgaagcggccaagaaccgtcccgacttcaccaagctgaccccgctgtacccg
aaccagcggctgcgcctggagaccacccccgagcgcctgaccacccgcgtgatcgacctg
atcatgcccatcggtaaggggcagcgtgccctgatcgtgtcgccgcccaaggccggtaag
accacgatcatgcaggacatcgccaacgcgatcaccaagaacaacccggaatgccacctc
atggtggtgctcgtcgacgagcgccctgaagaggtcaccgacatgcagcgctcggtcaag
ggcgaggtcatcgcctcgaccttcgaccgcccgccgtcagaccacactcaggccgcggaa
ctggccatcgagcgggccaagcgcctggtcgagcagggcaaggacgtcgtcgtgctgctg
gactcgatcacccgcctgggccgcgcgtacaacaacgcctccccggcctcgggtcgcatc
ctgtccggtggtgtggattccaccgcgctgtacccgccgaagcgattcctcggcgcggcg
cgcaacatcgagcacggcggctcgctcacgatcatcgccaccgcgatggtcgagaccggc
tccacgggtgacaccgtgatcttcgaagagttcaagggcaccggcaacgccgagctcaag
ctcgaccgcaagatcgccgagcgccgggtgttccccgcggtcgacgtcaacccgtcgggc
acgcgtaaggatgagctgctgctcagccccgacgaattcgccatcgtccacaagctgcgc
cgcgtgctctcgggcctcgacagccaccaggccatcgacctgctgatgagccagctgcgc
aagaccaagaacaactacgagttcctggtacaggtctccaagaccgcgccgggatcgatg
gacgtcgactaa
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