Mycolicibacterium fortuitum: XA26_48320
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Entry
XA26_48320 CDS
T04105
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mft
Mycolicibacterium fortuitum
Pathway
mft03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mft00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
XA26_48320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mft03400
]
XA26_48320
Enzymes [BR:
mft01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
XA26_48320
DNA repair and recombination proteins [BR:
mft03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
XA26_48320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
LSDAT_prok
MFD_D3
DUF3638
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ALI28631
UniProt:
A0A0N7H9C4
LinkDB
All DBs
Position
complement(4939001..4942621)
Genome browser
AA seq
1206 aa
AA seq
DB search
MTAPGHNHVQTPIAGLVELALTDPSLQDVVRRAADRPADLALVAPASARVLVAAALAQQG
PLLVVAATGREADDLTAELRGVFGEAVALFPSWETLPHERLSPGVETVAARLLLLRRLAH
PDDERLGPPLRVVVTTTRSLLQPMAPDIVGIEPVTLTVGAEAEFEAIIARLVDLAYTRVD
MVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRMFSIADQRSIPEIPVQNVIAV
PCRELLMTAEVRERAAALAAEHPTHENSVPGSVPDMLAKLAEGIPVDGMEALLPLLHPVQ
PTTLTHHLPEGAPVLLCDPEKVRTRAADLIKTGQEFLEASWSTAAVGGDAPIDIEALGAS
GFVPFDQAREDAVAGGHPWWTLSQLPDEKATELDLRPSPSARSQQSLEEIFAMLRAHVAT
GGYAAVVTPGTGTAHRVVEQLGDSDTPAGMLEPGAAPKAGVVGVLKGPLHDGVILQGANL
VIITETDLTGNRVTASEGKKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTERVVGG
ARREYLVLEYASSKRGGGSDRLYVPMDSLDQLSRYVGGEAPSLSKLGGSDWANTKTKARK
AVREIASELVALYAKRQSAPGHAFGPDTPWQNEMEDAFGFTETMDQLTAITEVKSDMEKP
VPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNRMAGFPVT
VKGLSRFTDPAESRATMEGMTDGSVDVVIGTHRLLQTGVTWKDLGLIIVDEEQRFGVEHK
EHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQVA
AALRRELLRDGQAFYIHNRVRTIDQAAARIRQLVPEARVVVAHGQMNEETLEKTVEGFWN
REYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPN
SPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGVEQSGHVAGVGFDLYVRLV
GEAVEAYRAAADGKTVATAEEPKEVRVDLPVDAHLPPEYIGSDRLRLEGYRRLAAATDED
AVRAVVDELVDRYGPLPVEAQRLVAVARLRLLCRKYGITEIGAVSASTIKLSPVVLPDSA
QLRLKRMYPGAHYRATTSVVQVPIPRESDGIGSPRIRDLDIVRMVAGLILVLNGQAENSL
DITANL
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccggggcacaaccatgtccagaccccgatcgcgggtctcgtcgagctggct
ttaaccgatccgtctctgcaggacgtcgttcgtcgcgccgccgaccggcccgccgatctc
gcacttgtggcgccggccagtgcccgcgtgctggtggccgctgcgctggcccagcagggt
ccgctgctggtagttgccgccaccggtcgcgaggccgacgacctgactgccgagctgcgc
ggcgtgttcggggaggcagtcgcccttttcccctcgtgggagacgttgccgcacgagcgg
ttgtccccgggcgtcgagaccgtcgcggcccggctgttgctgctgcgccggctggcccat
cccgacgacgagaggctgggcccgccgttgcgggtggtggtgaccaccacgcgctcgctg
ctgcagccgatggcccccgacatcgtcgggatcgagcccgtcaccctcacggtcggtgcc
gaggctgagttcgaggcaatcatcgcccggctggtcgacctggcttacacccgcgtcgac
atggtcggcaaacgaggggagttcgccgtccgcggcggcatcctcgacgtgttcccgccc
acggccgagcaccccgtgcgcgtcgagttctggggcgacgagatctccgagatgcggatg
ttctcgatcgccgaccagcgctcgatccccgagatcccggtgcaaaacgtcatcgcggtg
ccgtgccgtgaactgctgatgactgccgaggtgcgagaacgcgccgccgctctcgccgcc
gagcaccccactcacgagaacagcgtgccgggcagcgtgcccgacatgctggccaaactc
gccgaaggcatcccggtcgacggcatggaggcgctgctgcccctgctgcacccggtacag
ccgaccacgctgacgcaccacctgcccgagggcgcgccggtgctgttgtgcgacccggaa
aaggtgcgtacccgggcggccgatctgatcaagaccggccaggagttcctggaggcatcg
tggtcgacggccgcggtcggcggtgacgcgcccatcgacatcgaggcgctgggagcctcc
ggtttcgtgccgttcgaccaggcccgggaggacgccgtcgccggcgggcacccgtggtgg
acgctgagtcagctgcccgacgagaaggccaccgagctggatttgcggccctcgccgtcg
gcccggagccagcagagcctcgaagagatcttcgcgatgctgcgcgcccacgtggccacg
ggcgggtacgccgcggtggtcacccccggcaccggtacggcgcaccgcgtggtcgagcaa
ctcggcgactcggacacacccgcagggatgttggagcccggagcggcgcccaaggccggt
gtggtcggggtgctcaaagggccgctgcacgacggtgtgatcctgcagggcgccaacctc
gtcatcatcaccgagaccgatctgaccggcaatcgggtgaccgcctcggagggcaaaaag
cttgcggccaaacggcgtaacgtcgtcgacccgctcgcgctgaccgccggcgacctcgtc
gtgcacgaccagcacggcatcggcaagttcgtcgagatgaccgagcgggtggtcggcgga
gcccgccgtgaatacctggtgctggagtacgcgtcctcgaaacggggcggcggatcggat
cggctgtacgtgccgatggattccctggaccagctgtcgcgttacgtcggtggcgaggcg
ccgtcgctgtcgaagctcggcggcagtgactgggccaacacgaagaccaaggcccgcaag
gcagttcgtgagatcgccagcgagctcgtcgcgctctacgccaagcggcagtccgcgccc
gggcacgcgttcggtccggacaccccgtggcagaacgagatggaggacgcgttcggcttc
accgagaccatggaccagctgaccgccatcaccgaggtcaaatccgatatggagaaaccg
gttccgatggaccgggtgatctgtggcgacgtgggttacggcaagaccgagatcgcggtg
cgggccgcgttcaaggccgtgcaggacggaaagcaggtggcggtgctggtgccgacgacg
ctactggccgatcagcatctgcagactttcaccaaccgcatggcgggcttcccggtgacg
gtcaaagggttgtcgcggttcaccgatccggccgagtcccgggccaccatggagggcatg
accgacggttcggtcgacgtggtgatcggtacgcaccggctgctgcaaaccggtgtgacg
tggaaagacttgggcctcatcatcgttgacgaggaacagcgcttcggcgtcgagcacaaa
gaacacatcaagtcgatgcgtacccacgtcgacgtgctcaccatgagcgccaccccgatc
ccgcgcacgctggagatgagcctggccggcatccgcgagatgtcgacgatcctcaccccg
cccgaggagcgctatccggtgctgacctacgtcggcccacacgacgacaagcaggtggcc
gcggcgctgcgccgggagctgctgcgtgacgggcaggcgttctacatccacaaccgggtc
cgcaccatcgatcaggccgcggcccggatccgtcagctcgtgccagaggcccgggtggtc
gtcgcgcacggccagatgaacgaggagacgctggagaagaccgtcgagggcttctggaac
cgggagtacgacatcctggtctgcaccacgatcgtcgagaccggcttggacatctccaac
gccaacacgctgatcgtcgagcgggccgacaccttcggcctgtcccagctgcatcagctg
cgcggccgcgtgggccggagccgcgagcgtgggtacgcctacttcctgtacccgcccaac
tctccactgaccgagacggcctacgaccggttggccaccatcgcgcagaacaacgagctg
ggtgccggcatggccgtggccatgaaggacctggagatccgtggcgcgggcaacgtgctc
ggcgtcgagcagtccggtcacgtcgccggtgtcggcttcgacctctacgtccgcctggtc
ggcgaggcggtcgaggcctaccgggccgcggctgacgggaaaaccgttgccaccgcggag
gaaccgaaagaggtgcgggtcgatctgccggtcgacgcacacctgcccccggagtacatc
ggtagcgaccggctgcggctcgagggttaccgccggctcgccgcggcgaccgatgaggac
gcggtgcgggccgtcgtcgacgaactcgtcgaccgctacggaccgcttccggtcgaggcg
cagcgtctggtggcggtcgcacggctgcggttgctgtgccgcaaatacggcatcaccgaa
atcggagcggtgtcggcctcgacgatcaaactctcgccggtggtgctgccggattccgcg
cagctgcggctcaagcgcatgtatccgggtgcgcactaccgggccaccacctcggtggtc
caggtgccgatcccgcgggagagcgacggcatcggctcaccgcgcatccgtgacctcgac
attgtccgaatggtggccggcctgattctcgtgctcaacgggcaggcggagaacagcctc
gacatcaccgcgaacctgtaa
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