Corallococcus macrosporus HW-1: LILAB_16370
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Entry
LILAB_16370 CDS
T01558
Name
(GenBank) putative ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
mfu
Corallococcus macrosporus HW-1
Brite
KEGG Orthology (KO) [BR:
mfu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mfu03016
]
LILAB_16370
Enzymes [BR:
mfu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
LILAB_16370
Transfer RNA biogenesis [BR:
mfu03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LILAB_16370
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GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Helicase_Sgs1
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AEI65177
UniProt:
F8CL52
LinkDB
All DBs
Position
complement(3868775..3869911)
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AA seq
378 aa
AA seq
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MDAAGEESATHKLEQAREIAVDLEADSMHAFRARLCFLQLATDDEVFLLDTLQPGVVPGM
LAPLMADPARTKFFHAAQGDLQFLAEVGVRVQGLFDTHRAATLLGWPKVGLADIARERLG
VELPKEHQQSDFSIRPLPPGMREYIANDVRYLCELGRQVRDACREADILEEVLLDCARLC
DEAAARPDVGADYKPKLPRAGLNPVQLTLAHAIAQALHRKRLEWAEKENVPMGRMLSNMA
IGDIAVKLPTNPKELARMAGVRGSFIRAHGEDLLAVVRELLEKSRRGELAPERESKGPRD
SNKRKREEALKAFRVEKATERKVTPSVVLTNPLMDALASQPPKDVESLSQVPYFGEKRAR
LYGAALVELLAAYPVLNA
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
gtggacgccgcgggagaagagagcgccacccacaagctggaacaggcgcgtgaaatcgcc
gtggacctggaggcggattcgatgcacgccttccgcgcccggctgtgcttcctccagctc
gccaccgatgacgaggtcttcctgctcgacacgctccagccgggcgtggtgccggggatg
ctcgccccgctgatggccgacccggcgcggaccaagttcttccacgccgcccagggggac
ctccagttcctcgccgaggtgggggtgcgggtccagggcctcttcgacacccaccgggcg
gccaccctgctgggctggcccaaggtgggcctggcggacatcgcccgggagcgcctgggc
gtggagctgccgaaggagcaccagcagtccgacttctccatccgccccctgcccccgggc
atgagggagtacatcgccaatgacgtgcgctacctgtgcgagctgggccgccaggtgcga
gacgcctgccgcgaggcggacatcctggaggaggtcctcctggactgcgcgcgcctgtgc
gacgaggccgcggcgcgccccgacgtgggcgcggactacaagcccaagctgccgcgcgcc
gggctgaaccccgtgcagctcacgctggcgcacgccattgcccaggccctgcaccgcaag
cggctggagtgggcggagaaggagaacgtgcccatggggcggatgctctccaacatggcc
attggggacatcgcggtgaagctgcccaccaaccccaaggagctggcgcggatggccggc
gtgcggggttcgttcatccgcgcgcacggcgaggacctcctggccgtggtgcgcgagctg
ctggagaagtcgcgccggggcgagctggcgccggagcgcgagtccaagggccccagggac
tccaacaagcgcaagcgcgaggaggccctcaaggccttccgcgtggagaaggccaccgag
cgcaaggtgacgcccagcgtggtgctgaccaatccgctgatggacgcgctggcctcgcag
ccccccaaggacgtggagtccctgagccaggtgccctacttcggggagaagcgggcgcgg
ctgtacggcgccgcgctcgtggagctgctggccgcctaccccgtcctcaacgcctga
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