Corallococcus macrosporus HW-1: LILAB_16935
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Entry
LILAB_16935 CDS
T01558
Name
(GenBank) DEAD-box ATP dependent DNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mfu
Corallococcus macrosporus HW-1
Pathway
mfu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LILAB_16935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfu03019
]
LILAB_16935
03009 Ribosome biogenesis [BR:
mfu03009
]
LILAB_16935
Enzymes [BR:
mfu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LILAB_16935
Messenger RNA biogenesis [BR:
mfu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LILAB_16935
Ribosome biogenesis [BR:
mfu03009
]
Prokaryotic type
rRNA helicases
LILAB_16935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
P-loop_SecA
CMS1
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AEI65290
UniProt:
F8CML1
LinkDB
All DBs
Position
complement(3993269..3995692)
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AA seq
807 aa
AA seq
DB search
MSDIQEPNVPGSPAPDEAPTRPAEYIADIGFDDMNLSEPIRQALAERGYTNPTPVQARAF
RPAMEGKDLIVRSKTGTGKTAAFGLPLLEKIPADERRVRALILCPTRELALQVADELKML
ARHKGLKVAAIYGGASMKQQEDALEEGTPIIVGTPGRVFDHINRGNLKLDACDHAVLDEA
DEMLNQGFYEEVTRILDRLPKTRQVLLFSATVPTDIQNLIARYTTNAETLLLSGDVFTVE
HIHHIRYDVSDAFPKPRNLIYVLEKEEPQNAIIFCNTRDDTALVTAVLNRNGFDAELLNG
DLPQKERERVMGKVKRGEVAFMVATDIAARGIDISGLEYVINYSLPEDPAVYLHRVGRTG
RIGNKGTAINLFSGRELATYTALEKKYGIKFDKREMPAPEEAMRLWTERHVREIQEAAGG
SVFEGFLPLAAQLKPRADADDLIAFLLKYFFSHLRMEKAAAAMAAEGREPPPERKFESRE
GGRRERGERKERGDRRERGERDDRRERRGESSERERRPRREESRRERGGEGGRGAAALEA
GPGEAKLWVNLGTADGLGPGSIATALEDAGAPVGKVVRAELRPTFAYVFVAEEDAAAFET
LNGKQHGAKTLRVEKSKPRTERDATPRPPPSPDAGPGEAKLWINLGMDDGMDEAKLPAAL
EAAGAPAGKVLRALLRPTYGYAYVAEDDAPGFEAVNGKLHGEKALKVERHRPRGQRPERR
PRTEALPEIAGQTRLWVGLGKQDGLDEAGVAAALEAAGAPAGKVLRTDLRPTYAYVFVAD
EDVAAFEATHGKPHGERTLKVEQAKRK
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacatccaagagccaaacgtgccggggagtccggcgcctgacgaagccccgacg
cgtcccgccgagtacatcgcggacatcggcttcgacgacatgaacctgtcagagcccatc
cgccaagcgctggcggagcgcggttataccaaccccacccccgtccaggcccgcgccttc
cggcccgccatggagggaaaagacctcatcgtccgcagcaagacaggcaccggaaagacg
gccgccttcggacttcccctgctggagaagattcccgccgacgagcgccgcgtgcgggcg
ctcatcctctgccccacccgcgagctggccctccaggtggcggacgagctgaagatgctc
gccaggcacaagggcctgaaggtcgcggccatctacggcggcgcctccatgaagcagcag
gaggacgcgctggaggagggcacgcccatcatcgtcggcacgccgggccgcgtgttcgac
cacatcaaccgcggcaacctgaagctcgacgcgtgcgaccacgccgtcctggatgaagcg
gacgagatgctcaaccagggcttctacgaggaggtcacccgcatcctcgaccgcctcccc
aagacgcgccaggtgctgctcttcagcgccaccgtccccacggacatccagaacctcatc
gcgcgctacacgacgaacgcggagacgctgctgctgtccggcgacgtcttcacggtggag
cacatccaccacatccgctacgacgtgtcggacgccttccccaagccgcgcaacctcatc
tacgtgctggagaaggaagagccgcagaacgccatcatcttctgcaacacccgcgacgac
acggcgctggtgacggcggtgctcaaccgcaacggcttcgacgcggagctgctcaacggg
gacctgccgcagaaggagcgcgagcgggtgatgggcaaggtgaagcgcggcgaggtggcc
ttcatggtcgccacggacatcgcggcgcgcggcatcgacatctccggcctggagtacgtc
atcaactactcgctgccggaggacccggcggtgtacctgcaccgcgtgggccgcaccggc
cgcatcgggaacaagggcaccgccatcaacctcttctccgggcgcgagctggccacgtac
accgcgctggagaagaagtacggcatcaagttcgacaagcgagagatgccggccccggaa
gaggccatgcgcctgtggaccgagcgccacgtgcgcgaaatccaggaggccgcgggcggc
tccgtcttcgagggcttcctgccgctggccgcgcagctcaagccgcgcgcggacgcggat
gacctcatcgccttcctgctcaagtacttcttcagccacctgcgcatggagaaggccgcc
gcggcgatggcggccgaggggcgtgagcctccgccggagcgcaagttcgagagccgcgag
ggcggccggcgcgagcgtggtgagcgcaaggagcgtggcgaccggcgcgagcgcggtgag
cgcgacgaccggcgcgagcggcgcggtgagtcctcggagcgcgagcgccggccccgccgc
gaggagtcgcggcgcgagcgcggcggcgagggtggccgtggcgcggcggcgctggaggcc
ggccctggcgaggccaagctgtgggtgaacctgggcacggcggacggcctggggccgggc
agcatcgccaccgccctggaagacgcgggcgccccggtgggcaaggtggtgcgcgccgag
ctgcgccccaccttcgcgtacgtcttcgtggcggaggaggacgccgccgccttcgagacg
ctcaacggcaagcagcacggcgccaagacgctgcgcgtggagaagagcaagccgcgcacg
gagcgtgacgccacgccccgcccgcccccgtccccggacgcgggccccggcgaggcgaag
ctgtggatcaacctgggcatggacgacggcatggacgaggcgaagctgcccgccgcgctg
gaggccgcgggcgccccggccggcaaggtgctgcgcgccctgctgcgccccacctacggc
tacgcctacgtggccgaggacgacgcgcccggcttcgaggccgtcaacggcaagctccat
ggcgaaaaggcgctgaaggtggagcggcaccgtccgcgcgggcagcgaccggagcgccgc
ccccgcaccgaggccctgccggagattgctggccagacgcgcctgtgggtgggcctgggc
aagcaggacgggctggacgaggcgggcgtggccgccgcgctggaggccgcgggcgctccg
gccggcaaggtgctgcgcacggacctgcgccccacctacgcgtacgtcttcgtcgccgac
gaggatgtggcggccttcgaggccacgcacggcaagccccacggcgagcgcacgctcaag
gtggagcaggccaagcggaagtag
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