Corallococcus macrosporus HW-1: LILAB_18140
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Entry
LILAB_18140 CDS
T01558
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
mfu
Corallococcus macrosporus HW-1
Pathway
mfu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LILAB_18140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfu03019
]
LILAB_18140
03016 Transfer RNA biogenesis [BR:
mfu03016
]
LILAB_18140
Enzymes [BR:
mfu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LILAB_18140
Messenger RNA biogenesis [BR:
mfu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LILAB_18140
Transfer RNA biogenesis [BR:
mfu03016
]
Prokaryotic type
tRNA degradation factors
LILAB_18140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
KH_1
PNPase
KH-I_KHDC4-BBP
S1_RRP5
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
AEI65530
UniProt:
F8CRI5
LinkDB
All DBs
Position
4286133..4288307
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AA seq
724 aa
AA seq
DB search
MLKKSVKIGESELSIEVGRLAKQADGSVVVRYGDTMLLVTAVSAREKKDIDFLPLTVEYQ
EKLYSAGRIPGSYFKREGRLTEKETLASRLIDRSCRPLFPEGYAYETQVIASVISSDPEN
EGDIHGITGASAALWVSDIPFDGPIAGIRVGRVGGELVANPTAKQREQSDLDLIMAVSRK
AIVMVEGGAEEVSEADMVAALDFGFKTAQPALDLQDELRRELNKQVRSFEKPAAVDEALR
AKVRELAMDGIKAGYGIKEKAARYDALSKTKKETLARLKEQLGDGYTPLVEKHAKSVVED
LKYEHMREMTVNGGRIGDRGHDVVRQITCEVGVLPRTHGSAVFTRGETQALVVTTLGTSD
DEQRLEMLGGMAFKRFMLHYNFPPFSVNETKPLRGPGRREVGHGALAERALRNMVPKSES
FPYTVRLVSDILESNGSSSMASVCGGTLALMDAGVPLKAPVAGIAMGLVKEGDKIAILSD
ILGDEDHLGDMDFKVCGTSKGITSIQMDIKITGLTTEIMSRALEQARQGRLHILGEMLKT
LAESRKEISQYAPRITTIQIRPEFIKNVIGPGGKVIKDIIARTGAAINIEDSGRVDIASA
NGEAVKAAIAMIQALTREAEIGKIYTGTVRKIAEFGAFVELFPGTDGLIHISELSDKRVK
SVSDVLNEGDEVLVKVVSIDKTGKIRLSRKEAMAERAAQQGAAAAGEAAAQPAAPAPTQP
DAKA
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgttgaagaagagcgtcaagattggcgagagcgagctgagcatcgaagtgggccgtctg
gcgaagcaggccgacggttccgtggtggtccgctatggcgacaccatgctgctcgtgacg
gcggtgagcgcccgggagaagaaggacatcgacttcctccccctgacggtggagtaccag
gagaagctgtactcggccggccgcatccccggcagctacttcaagcgcgagggccgcctc
acggagaaggagacgctggccagccgcctgatcgaccgctcctgccgccccctgttcccg
gagggctacgcgtacgagacgcaggtcatcgccagcgtcatctcgtccgacccggagaac
gagggtgacatccacggcatcaccggcgcctccgcggcgctgtgggtgtcggacatcccg
ttcgacggccccatcgccggcatccgcgtgggccgcgtcggcggtgagctggtggccaac
cccaccgcgaagcagcgcgagcagagcgacctggacctcatcatggcggtgagccgcaag
gccatcgtcatggtggaaggtggcgcggaggaggtctccgaggccgacatggtcgcggcg
ctggacttcggcttcaagacggcgcagcccgcgctggacctgcaggacgagctgcggcgc
gagctgaacaagcaggtccgctccttcgagaagcccgccgccgtggacgaggccctgcgc
gccaaggtgcgcgagctggccatggacggcatcaaggcgggctacggcatcaaggagaag
gccgcccgctacgacgcgctctccaagacgaagaaggagacgctcgccaggctcaaggag
cagctcggcgacggctacaccccgctggtggagaagcacgccaagtcggtggtggaggac
ctgaagtacgagcacatgcgcgagatgacggtcaacggtggccgcatcggcgaccgtggc
cacgacgtggtccgtcagattacgtgcgaagtgggcgtgctcccgcgcacccacggcagc
gcggtcttcacccgcggcgagacgcaggcgctcgtcgtcaccacgctgggcaccagcgat
gacgagcagcgcctggagatgctgggcggcatggcgttcaagcgcttcatgctgcactac
aacttcccgccgttcagcgtgaacgagacgaagccgctgcgcggcccgggccgccgtgaa
gtcggccacggcgcgctggcggagcgcgcgctgcgcaacatggtgccgaagagcgagtcc
ttcccgtacacggtgcgcctggtgtcggacatcctggagtccaacggctcctcgtccatg
gcctccgtctgcggcggcacgctggcgctgatggacgcgggtgtcccgctcaaggccccg
gtggccggtatcgccatgggcctggtgaaggagggcgacaagatcgccatcctctccgac
atcctcggtgacgaggaccacctgggcgacatggacttcaaggtgtgcggcacctcgaag
ggcatcacgtccatccagatggacatcaagatcaccggcctcaccacggagatcatgagc
cgcgcgctggagcaggcgcgtcagggccgtctgcacatcctgggcgagatgctcaagacg
ctggccgagtcccgcaaggagatcagccagtacgcgccgcgcatcaccaccatccagatt
cgtcccgagttcatcaagaacgtcatcgggccgggcggcaaggtcatcaaggacatcatc
gcccgcacgggtgccgccatcaacatcgaggactcgggccgcgtggacatcgccagcgcg
aacggcgaggccgtgaaggccgccatcgcgatgattcaggcgctgacccgcgaggccgaa
atcgggaagatctacacgggcacggtgcggaagatcgccgagttcggcgccttcgtggag
ctgttcccgggcaccgacggcctcatccacatctccgagctgtccgacaagcgcgtcaag
agcgtctccgacgtgctgaacgagggcgacgaggtgctggtgaaggtcgtcagcatcgac
aagacgggcaagatccgcctgtctcgcaaggaggccatggcggagcgcgccgcgcagcag
ggcgccgccgccgcgggtgaggccgccgcgcagcccgcggctccggcgccgacgcagccg
gacgccaaggcctag
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