Corallococcus macrosporus HW-1: LILAB_23025
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Entry
LILAB_23025 CDS
T01558
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
mfu
Corallococcus macrosporus HW-1
Brite
KEGG Orthology (KO) [BR:
mfu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfu03019
]
LILAB_23025
Enzymes [BR:
mfu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LILAB_23025
Messenger RNA biogenesis [BR:
mfu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LILAB_23025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
Flavi_DEAD
AAA_22
Cas3-like_C_2
AAA_19
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AEI66500
UniProt:
F8CLH6
LinkDB
All DBs
Position
complement(5477301..5479865)
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AA seq
854 aa
AA seq
DB search
MADVALPIDPLLPDIVSTLRGARSLVLEAPPGAGKTTRVPRALLEAGLGQGKEIIVLQPR
RLPTRLAAQRVSDELGERVGDSVGYQVRFEDVRSAKTRLSFVTEGVLGRRLLSDPKLRDV
GIVVLDEFHERHLSADISLALLRRLQETARPDLKVVVMSATLEAEPIRAYLGGSPSLRSE
GRRFDVSVEYLPAPDDRYLDQQVLSGLKRVFAQGVDGDVLVFLPGAGEIRRARDTCAEFA
ERQGADVLPLHGDLSPAEQDRAVRRSSRRKVILSTNVAETSVTIDGVAVVIDSGLARVAS
HSPWSGLPTLKLSKVSRASAIQRAGRAGRTRAGHCLRLYTQHDFDGRPEQDAPEIRRTDL
AETVLSLRAAGITDLAAFPFFEPPPAASLDAAETLLRRLGAVDPSGRVTEVGERLLRFPV
HPRQARIIVEGERRGVGAEAAVLAALMGERDIRREARANLGQGGRSAAIVSGPSDLLELF
ERFREAERAGFASGRMHSLSLEAGAVQSVDRVQKQLRRAVRGQGQRPQRPEDVEQALMLS
VLAGYPDRVARRRRPRAPELLMFGGGTATLSDVSVVQDADLMVAADAEERPGKGAVVRLA
SAVEPEWLLDLYPDALEEVDTLQWNAEARRVERLTRLSYGNLVLEETRTPAPASEATARV
LVEAALAAGPGKFADPEALEQWRTRVALLAEAFPEARFPTIDDAFLRDALASLCSDARSF
KDLEGVSLLDALYARLTSEQQRLLASHAPERVTLPGGRGVKVHYEPGKPPWVESRLQDFF
GMAQGPNVCAGRVPLVLHLLAPNMRAVQVTTDLAGFWERHYPAIRKELSRKYPRHSWPED
PRHAQPPAPRPPRR
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgtcgcgcttcccatcgatcccctgttgccggacatcgtctccacgctgcgt
ggcgcgcgctcgctcgtgctggaggcccctcccggcgcggggaagacgacccgtgtgcct
cgcgcgctcctggaggccgggctcggacagggcaaggagatcatcgtcctccagccgcgc
cggctcccgacgaggctggccgcgcagcgcgtgtccgacgagctgggcgagcgcgtgggc
gactccgtgggctaccaggtccgcttcgaggacgtgcgcagcgcgaagacgcgcctgtcc
ttcgtcaccgagggcgtcctgggccgccggctcctctccgacccgaagctccgggatgtg
ggcatcgtcgtgctcgacgagttccacgagcggcacctctccgcggacatctccctggcc
ctgctgcgccggctccaggagacggcgcgccccgacctcaaggtcgtggtcatgtccgcg
accctggaggccgagcccatccgggcgtacctcggcggaagtccctcgctccgctccgaa
ggccgccgcttcgacgtcagcgtggagtacctgcccgcgcccgatgaccgctacctggac
cagcaggtgctctccggcctcaagcgcgtcttcgcgcaaggcgtggatggcgacgtgctc
gtcttcctccccggcgcgggtgaaatccgccgcgcgcgggacacctgcgcggagttcgcc
gagcgccagggcgccgacgtccttcccctccacggagacctgtcccccgccgagcaggac
cgcgccgtgcggcgcagctcccggcggaaggtcatcctctccaccaacgtcgccgagacg
tccgtcaccattgacggcgtggccgtggtcatcgactccgggctcgcgcgcgtggcgtcc
cactcgccctggtccggcctccccacgctcaagctgtccaaggtcagccgcgcgtccgcc
atccagcgcgcgggccgcgccggacgcacccgcgcgggccactgcctgcgcctctacacc
cagcacgacttcgacggccgcccggagcaggatgccccggagattcgccgcacggacctc
gcggagacggtgctctccctgcgcgcggccggcatcaccgacctggccgcgttccccttc
ttcgagccgccccccgccgcgtcgctcgatgcggcggagacgctgctccgccgcctgggc
gcggtcgacccgtcaggccgcgtcacggaggtgggcgagcggctcctgcgcttccccgtc
cacccccgccaggcgcgcatcatcgtcgagggagaacgccggggcgtgggcgccgaggcg
gcggtgctcgccgcgctcatgggtgagcgcgacatccgccgcgaggcccgcgccaacctg
ggccagggaggccgctcggccgccatcgtcagcggcccgtctgatttgctggagctgttc
gaacgcttccgagaggcggaacgcgcgggcttcgcctccggccgcatgcactcgctctca
ctggaggccggcgccgtgcagtccgtggaccgggtccagaagcagctccggcgcgcggtg
cgcggccagggccagcgtccccagcggcccgaggacgtggagcaggccctgatgctcagc
gtgctcgcgggctatcccgaccgcgtcgcccggcgccggcgcccccgcgcgcccgagctg
ctgatgttcggcggaggcaccgccaccctgtcggacgtcagcgtcgtccaggacgccgac
ctcatggtggccgccgacgccgaggagcgccccggcaagggcgccgtggtgcggctcgcc
agcgccgtggagcctgaatggctgctggacctctacccggacgcgctggaggaggtggac
accctccagtggaacgccgaggcccggcgcgtggagcggctcacccgcctgtcctacggc
aacctcgtgctggaggagacgcgcacccccgcccccgcctccgaggccaccgcgcgcgtg
ctcgtggaagcggcgttggccgcggggcccgggaagttcgcggacccggaggccctggag
cagtggcgcacccgcgtggccctgctggcggaggccttcccggaggcgaggttccccacc
atcgatgacgccttcctgcgcgacgcgctggcgtcactctgctcggacgcgcgcagcttc
aaggacctggagggcgtgtcgctgctggacgcgctctacgcgcggctcacctccgaacag
cagcggctgttggcctcgcacgcgcccgagcgcgtgacgctccccggaggccgcggcgtc
aaggtccactatgagccgggcaagccgccctgggtggagtcccggctccaggacttcttc
ggcatggcgcaggggcccaacgtctgcgcgggccgcgtcccgctggtgctgcacctgctg
gcgcccaacatgcgcgctgtgcaggtgacgaccgacctggccggcttctgggagcggcac
tatcccgccatccgcaaggagctgagccgcaagtacccccggcactcgtggcccgaggac
ccgcggcatgcccagccgcccgccccccggccaccgcgccgctga
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