Corallococcus macrosporus HW-1: LILAB_23115
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Entry
LILAB_23115 CDS
T01558
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mfu
Corallococcus macrosporus HW-1
Pathway
mfu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mfu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LILAB_23115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mfu03021
]
LILAB_23115
03400 DNA repair and recombination proteins [BR:
mfu03400
]
LILAB_23115
Enzymes [BR:
mfu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LILAB_23115
Transcription machinery [BR:
mfu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LILAB_23115
DNA repair and recombination proteins [BR:
mfu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LILAB_23115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AEI66518
UniProt:
F8CLJ4
LinkDB
All DBs
Position
5498326..5502540
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDIFNFFEKPKDPLSFNAIRIALASPDKIRQWSHGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECNCGKYKRMKHRGVVCEKCGVEVIQSKVRRERLGHITLATPVAHIWFLKSL
PSRIGNLLDITLKELEKVLYCESYIVLDPKATPLQKGELISEDKMHRLYQEHGEDSFTTG
MGGEAVREMLKSLDVDKLSEELRKDMRETTSEAKRKKYAKRLKVAEAFRVSGNKPEWMML
DVIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLQELNAPDIIIRNEKRML
QEAVDALFDNGRRGKTITGPNKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELRLHQCGLPKIMALELFKPFIYNKLEEKGYVTTIKSAKKMVEKERPEVWDILEDVIREH
PVLLNRAPTLHRLGMQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQME
ARVLMMSTNNILSPANGKPIIVPTQDMVLGIYYMTRAREFASGEGRVFASPDEVRAAYDH
GEVHLQAKVVCRIDGKRKETTVGRVLLWEVVPRAVGFDAINKVLDKKSLGGLIDLCYRLT
GEKETVLLADRVRSLGYYNATRAGISIALKDMIIPAKKQEFLDFARKEVSEIENQYLEGL
ITDGERYNKVIDIWAEITEKVAQEMMQQISQEETTGERDGKRETRKQPSFNPIYIMADSG
ARGSAQQIRQLAGMRGLMAKPSGEIIETPITANFREGLSVLQYFISTHGARKGLADTALK
TANSGYLTRRLVDVAQDAIINEYDCGTMDGLFIGALVEGGEIIEPLGERILGRVALDDIL
DPVTGEVLVRANEEIDEDRVRRIENSGMDKVKIRSVLTCQAKRGICVECYGRDLARGRKV
SVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAATRRAEQSSLENRYAGSVKFAGLITVQKT
DGTLVAMNRNGEIVVVDDSGRERERYQVIYGARILVKEGQRIEPGVLMAEWDPFAIPLLT
EVGGVVRYEDIIEGVTMSEALDEVTGLSRKTVIESKDPEARPRVTIRDANGNVKDLPSSR
NPASYFLPQGSIITVNDGDEIHPGEVIAKVPRETTKTKDITGGLPRVAELFEARKPKDAA
AIAEIDGVVSFGKDTKGKRKLIITPEVNGEQRTDLAKEYLISKGKNISVHSGDRVKAGEA
MMDGSANPHDILKVLGEKELARYLVDEVQEVYRLQGVKINDKHIETIVRQMLRRVRVTDV
GDTNFLVDEQVEKWVFEEENEKVMSEGKRPAVGEPLLLGITKASLSTESFISASSFQETT
KVLTEAAINGKVDYLRGLKENVIMGRLIPAGTGLPNYKHLDIAVESPTDEVNEMEAALAA
THGDTGPLSAPPSRPEGTQTTGAA
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
gtgaaggacattttcaacttcttcgagaagccgaaggacccgctgtcgttcaacgccatc
cgcatcgccctggcgtcgcccgacaagattcgccagtggtcccatggcgaggtgaagaag
ccggagacgatcaactaccgcacgttcaagccggagcgggacgggctcttctgcgcccgc
atcttcgggccggtgaaggactacgagtgcaactgcggcaagtacaagcgcatgaagcac
cgcggcgtggtgtgcgagaagtgcggcgtggaggtcatccagtccaaggtgcgccgtgag
cgcctgggccacatcaccctggccacgcccgtggcccacatctggttcctgaagtcgctg
ccgagccgcatcggcaacctgctcgacatcacgctgaaggagctggagaaggtcctctac
tgcgagagctacatcgtcctcgatccgaaggcgacgccgctgcagaagggcgagctcatc
agcgaggacaagatgcaccggctctaccaggagcacggtgaggactccttcaccacgggc
atgggcggcgaggccgtccgcgagatgctcaagtcgctggacgtggacaagctgtccgaa
gagctgcgcaaggacatgcgggagacgaccagcgaggcgaagcggaagaagtacgccaag
cgcctgaaggtggccgaggcgttccgcgtctccggcaacaagccggagtggatgatgctg
gacgtgattccggtgattccgccggacctgcgcccgctcgttcccctggacggtggccgc
ttcgcgacctccgacctgaacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctg
aagcgcctccaggagctcaacgctccggacatcatcatccgcaacgagaagcggatgctg
caggaggccgtggacgcgctgttcgacaacggccgccgcgggaagaccatcacgggcccc
aacaagcgcccgctgaagtcgctgtccgacatgctcaagggcaagcagggccggttccgc
cagaacctgctcggcaagcgcgtggactactcgggccgctccgtcatcgtcgtgggcccc
gagctgcgcctgcaccagtgcggcctgccgaagatcatggcgctcgagctcttcaagccg
ttcatctacaacaagctcgaagagaagggttacgtcaccaccatcaagtccgcgaagaag
atggtggagaaggagcgtcccgaggtctgggacatccttgaggacgtcatccgcgagcac
ccggtgctcctcaaccgcgcgcccacgctgcaccgtctgggcatgcaggccttcgagccc
gtgctgattgaaggcaaggccatccagctccacccgctggtgtgcgccgccttcaacgcc
gacttcgacggcgaccagatggccgtgcacgtgccgctctccatcgaggctcagatggag
gcccgcgtgctgatgatgtccaccaacaacatcctcagccccgcgaacggcaagcccatc
atcgtcccgacgcaggacatggtgctcggcatctactacatgacccgcgcccgcgagttc
gccagcggcgagggccgcgtgttcgcctcgcccgacgaggtgcgcgccgcgtacgaccac
ggcgaggtccacctccaggcgaaggtcgtctgccgcatcgacggcaagcgcaaggagacc
accgtcggccgcgtcctcctgtgggaggtcgtcccgcgcgcggtgggcttcgacgccatc
aacaaggtgctcgacaagaagtcgctcggcggcctcatcgacctctgctaccgcctcacg
ggtgagaaggagacggtgctgctcgcggaccgcgtgcgcagcctcggctactacaacgcc
acccgcgccggcatctccatcgcgctcaaggacatgatcatccctgcgaagaagcaggag
ttcctggacttcgcgcgcaaggaggtgtcggagatcgagaaccagtacctcgaggggctc
atcaccgacggcgagcgctacaacaaggtcatcgatatctgggcggagatcaccgagaag
gtcgcccaggagatgatgcagcagatctcccaggaggagaccaccggggagcgcgacggc
aagcgcgagacgcgcaagcagccgtccttcaaccccatctacatcatggccgactcgggc
gcgcgtggtagcgcccagcagatccgtcagctcgcggggatgcgtggcctgatggcgaag
ccctccggcgaaatcatcgagacgcccatcacggccaacttccgtgaaggcctctccgtg
ctgcagtacttcatctccacgcacggcgcccgcaagggcctggcggacacggcgctcaag
acggccaactccggttacctcacccgccggctcgtggacgtggcgcaggacgccatcatc
aacgagtacgactgcggcaccatggacggcctgttcatcggcgccctggtggagggcggt
gagatcatcgagccgctcggcgagcgcatcctgggccgcgtggccctggacgacatcctc
gaccccgtgacgggcgaggtgctggtgcgcgccaacgaggagatcgacgaggaccgcgtc
cgccgcatcgagaacagcggcatggacaaggtgaagatccgctcggtgctcacctgccag
gccaagcgcggcatctgcgtggagtgctacggccgtgacctggcccgcggccgcaaggtg
tccgtgggtgaggcggtcggcgtcatcgcggcgcagtccatcggtgagccgggtacccag
ctcacgatgcgcaccttccacatcggtggtgcggcgacgcggcgcgcggagcagtccagc
ctggagaaccgctacgcgggtagcgtgaagttcgcgggcctcatcaccgtgcagaagacg
gacggcacgctggtggccatgaaccgcaacggcgaaatcgtcgtcgtggacgactcgggc
cgcgagcgcgagcgctaccaggtcatctacggcgcccgcatcctcgtgaaggaaggccag
cgcatcgagccgggcgtcctcatggcggagtgggacccgttcgccatcccgctgctgacc
gaggtcggcggtgtcgtgcgctacgaggacatcatcgaaggcgtgacgatgtccgaggcg
ctggacgaggtgacgggcctttcccggaagacggtcatcgagtccaaggacccggaggcg
cgtccgcgcgtcaccatccgcgacgcgaacggcaacgtgaaggacctgccgagctcccgc
aacccggcgagctacttcctgccgcagggctccatcatcaccgtcaacgacggcgatgag
atccacccgggcgaggtcatcgccaaggtgccgcgcgagacgacgaagaccaaggacatc
acgggcggtctgccccgcgtggccgagctcttcgaggcgcgcaagccgaaggacgcggcg
gcgatcgccgaaatcgacggcgtggtgtcgttcggcaaggacaccaagggcaagcgcaag
ctcatcatcacccccgaggtgaacggcgagcagcgcaccgacctggccaaggagtacctg
atctccaagggcaagaacatcagcgtccactccggcgaccgcgtgaaggccggcgaggcg
atgatggacggttcggccaacccgcacgacatcctcaaggtgctgggcgagaaggagctc
gcgcgctacctggtggacgaagtgcaggaggtctaccgactccagggcgtgaagatcaac
gacaagcacatcgagaccatcgtgcggcagatgctccgccgcgtgcgcgtcaccgatgtg
ggcgacaccaacttcctggtcgacgagcaggtcgagaagtgggtgttcgaggaggagaac
gagaaggtcatgtcggaaggcaagcgccccgccgtcggcgagccgctgctgctcggcatc
accaaggcctcgctctccaccgagtccttcatctccgcgtcgtccttccaggagaccacc
aaggtgctcaccgaggccgccatcaacggcaaggtggactacctgcgcggcctcaaggag
aacgtcatcatgggccggctcatccccgccggcacgggcctgccgaactacaagcacctg
gacatcgcggtggagagccccaccgacgaggtcaacgagatggaggccgccctggccgcc
acccacggcgacaccggccccctgagcgcgccgccttcccgcccggaaggcacccagacg
accggcgcggcctag
DBGET
integrated database retrieval system
