Corallococcus macrosporus HW-1: LILAB_27795
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Entry
LILAB_27795 CDS
T01558
Name
(GenBank) RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mfu
Corallococcus macrosporus HW-1
Pathway
mfu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LILAB_27795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfu03019
]
LILAB_27795
03009 Ribosome biogenesis [BR:
mfu03009
]
LILAB_27795
Enzymes [BR:
mfu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LILAB_27795
Messenger RNA biogenesis [BR:
mfu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LILAB_27795
Ribosome biogenesis [BR:
mfu03009
]
Prokaryotic type
rRNA helicases
LILAB_27795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
WSD
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
AEI67446
UniProt:
F8CG94
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All DBs
Position
6716241..6717899
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AA seq
552 aa
AA seq
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MKPALVEALSALGYEEPTPIQAAALPPLLAGKDLLGIAATGTGKTAAFALPLLNHVEPGA
CRPNTTSALVLVPTRELAMQVSEAIHRYGQKLGISVLPLYGGQVIGQQLRVLKRGVDVVV
ATPGRALDHLRRGTLQLDDVRVVVLDEADEMLDMGFAEDLEAILSGTPEDRQTALFSATL
PPRIASIAERHLHEPVRVKIAREKVEQGEMPRVRQTAYVVPRAFKIATLGRLLDVESPTA
AIIFCRTRTEVDDLTVSLNGRGWRAHALHGGMTQEQRDRVIKQLKSQGTDLLVATDVAAR
GLDIPRLSHVVNFDVPNAPEAYVHRIGRTGRAGREGVAITLVEPREHRLLRNIERVTGQR
IEVATVPTVADMREKRQELLRASLRETLVAGEYDSLRNVVEGLASEFDAMDIAAAAVKLL
HEAQDEGRDTEETEIPVVAPPQERRERPGGKFGGPAGRAGPARGPKARGGPPTWDVTRLW
IGAGRHAGMRPADLVGAIAGEAGVESSKIGAIQIGDTFSLVEVPESDANRIIAALKNATL
RGKKVQVRKDRN
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
ttgaagcccgcgctcgtcgaggcgctcagcgcgctcggctacgaggagcccacccccatc
caggccgccgccctcccgcccttgctggcggggaaggacctgctcggcatcgccgccacc
ggcaccggcaagacggccgccttcgccctgcccctgctcaaccacgtggagcccggcgcc
tgccggcccaacaccacctccgcgctggtgctggtccccacgcgcgagctggccatgcag
gtctccgaggccatccaccgctacggccagaagctcggcatctccgtgctgcccctgtac
ggcgggcaggtcatcggccagcaactccgcgtcctcaagcgcggcgtggacgtcgtcgtc
gccaccccgggccgcgcgctggaccacctgcgccgtggcacgctccagctcgatgacgtg
cgcgtcgtcgtgctcgacgaggccgacgagatgctcgacatgggcttcgccgaggacctg
gaggccatcctctccggcacgcccgaggaccggcagacggccctcttctccgccaccctc
ccgccgcgcatcgccagcatcgccgagcgccacctgcacgagcccgtgcgcgtgaagatc
gcccgcgagaaggtggaacagggggagatgccccgtgtccgccagacggcctacgtcgtc
ccgcgcgccttcaagatcgccaccctgggccgcctgctcgacgtggagtcccccaccgcg
gccatcatcttctgccgcacccgcaccgaggtggatgacctcaccgtctccctcaacggc
cgcggctggcgcgcgcacgccctgcacggcggcatgacgcaggagcagcgagaccgcgtc
atcaagcagctcaagtcccagggcaccgacctgctcgtggccaccgacgtggcggcgcgc
ggtctggacatccctcgcctgtcccacgtggtgaacttcgacgtgcccaacgcgccggaa
gcctacgtgcaccgcatcggccgcacgggccgcgccggccgcgagggcgtggccatcacc
ctggtggagccccgcgagcaccgcctgctgcgcaacatcgagcgcgtcaccggccagcgc
atcgaggtggccaccgtccccaccgtggcggacatgcgcgagaagcgccaggagctgctc
cgcgcctccctccgcgagacgctggtggccggcgagtacgactccctccgcaacgtggtg
gagggactggccagcgagttcgacgccatggacatcgccgccgccgccgtgaagctgctc
cacgaggcccaggacgagggccgcgacacggaggagacggagatccccgtcgtcgccccg
ccgcaggagcggcgtgagcgcccgggcggcaagttcggaggccccgccggccgcgcgggc
cctgcccgaggccccaaggcgcgcggtggcccgccgacgtgggacgtcacccgcctgtgg
attggcgcgggccgtcacgccggcatgcgccccgcggacctcgtgggcgccatcgccggg
gaggcgggcgtggagtcctccaagattggcgccatccagattggcgacaccttctccctc
gtggaggtgcccgagtccgacgccaaccgcatcatcgcggcgctgaagaacgccaccctg
cgcggcaagaaggtgcaggtccgcaaggaccggaactga
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