Corallococcus macrosporus HW-1: LILAB_32835
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Entry
LILAB_32835 CDS
T01558
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mfu
Corallococcus macrosporus HW-1
Brite
KEGG Orthology (KO) [BR:
mfu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mfu03016
]
LILAB_32835
Enzymes [BR:
mfu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
LILAB_32835
Transfer RNA biogenesis [BR:
mfu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
LILAB_32835
Prokaryotic type
tRNA splicing ligases
LILAB_32835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AEI68448
UniProt:
F8CCB4
LinkDB
All DBs
Position
complement(8085088..8086323)
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AA seq
411 aa
AA seq
DB search
MSRDNGNYEVLSDEAGRPIKAWTVGVPFEDEAKKQLRNLRGLPFIHKWVAVMPDVHRGYG
ATVGSVVPTVGAVVPAAVGVDIGCGMIAVRTTLRADQLPDSLRGVRSAIERAVPHGRSDN
GGRNDVGAWRVAPARHRQAWARLVEGYDRIVAKHPRIGRGPELAHLGTLGTGNHFIELCL
DESDGVWLMLHSGSRGVGNRIGSYFIELAKEDMRRWFINLPDGDLAYLAEGTEHFEDYVF
AVSWAQEFAATNRALMLQEAVEALQSSGELPPFELKDSAVNCHHNYISREHHFGKNCFVT
RKGAVRAREGDLGIIPGSMGARSYIVRGKGNADSFHSCSHGAGRVMSREAAKRRFTVEDH
VKATAGVECRKDVDVIDETPAAYKPIDAVMAAQADLVEVVHTLKQVVCVKG
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcgacaacgggaactacgaggtgctgtcggacgaggcgggccgccccatcaag
gcgtggacggtgggggttccgttcgaggacgaggcgaagaagcagctccgcaacctgcgc
ggcctccccttcatccacaagtgggtcgcggtgatgccggacgtgcaccgcggttacggc
gcgacggtggggagcgtggtccccacggtgggggcggtggtgccggcggcggtgggggtg
gacatcggctgcgggatgatcgccgtccgcacgacgctgcgggcggaccagctcccggac
tcgctgcgtggggtgcgctcggcgattgagcgggcggtgccgcacggccgctcggacaac
ggtggccgcaacgacgtgggggcgtggcgtgtggcgccggcgcggcaccggcaggcgtgg
gcgcggctggtggaggggtatgaccgcatcgtcgcgaagcacccgcgcatcggccgtggg
ccggagctggcgcacctgggaacgctgggaacggggaaccacttcatcgagctgtgcctc
gacgagtcggatggcgtgtggctgatgttgcactccggttcgcgcggggtggggaaccgc
atcgggagctacttcatcgagctggcgaaggaggacatgcgccgttggttcatcaacctg
ccggacggggacctggcgtacctggcggaagggacggagcacttcgaggactacgtcttc
gcggtgagctgggcgcaggagttcgccgccacgaaccgggccctcatgctgcaggaagcg
gtggaggcgctgcagtcgagcggtgagctgcctccgttcgagctgaaggactcggcggtg
aactgccatcacaactacatctcgcgtgagcaccacttcggaaagaactgcttcgtgacg
cgcaagggcgcggtgcgggcgcgtgagggcgacctcggcatcatccccggaagcatgggg
gcgcgttcgtacatcgtccgcgggaaggggaacgcggacagcttccactcctgcagccac
ggcgcgggccgggtgatgtcgcgtgaggcggcgaagcggcgcttcacggtggaggaccac
gtgaaggcgaccgcgggcgtggagtgccgcaaggacgtggacgtcatcgacgagacgccg
gctgcgtacaagcccatcgacgcggtgatggcggcgcaggcggacctggtggaggtggtc
cacaccctgaagcaggtcgtgtgcgtgaaggggtag
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