Corallococcus macrosporus HW-1: LILAB_35660
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Entry
LILAB_35660 CDS
T01558
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
mfu
Corallococcus macrosporus HW-1
Pathway
mfu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LILAB_35660 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mfu03021
]
LILAB_35660 (rho)
03019 Messenger RNA biogenesis [BR:
mfu03019
]
LILAB_35660 (rho)
Transcription machinery [BR:
mfu03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LILAB_35660 (rho)
Messenger RNA biogenesis [BR:
mfu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LILAB_35660 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
Spore_III_AA
S1CSD-TOTE-2
NACHT
AAA_22
OB_RNB
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
AEI69013
UniProt:
F8CLX7
LinkDB
All DBs
Position
complement(8767063..8768325)
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AA seq
420 aa
AA seq
DB search
MQVIKLNDLKRMKITDLSKMAHDVGIEGYQGLKKQDLIFALLGGIADKRFEVHAEGVMEL
LSDGFGFLRSADSDYQPSPDDIYVSPSQVRRFNLRPGDTVTGPIRQPREGERFFALQKVD
KVNFADPMSDAARERILFDNLTPLYPTRKLKLEHESSEMTTRIIDMFCPIGLGQRCLIVA
PPKAGKTVLLQNIAHAISRNHPDVYLIVLLVDERPEEVTDMERNVRGEVVSSTFDEPATR
HVQVAEMVIDKAKRLVEQKYDVCILLDSITRLARAYNTVVPASGKILSGGVDANALHKPK
RFFGAARNIEEGGSLTIIGTALIDTGSRMDEVIFEEFKGTGNSEIVLDRKLMEKRIFPTL
DINKSGTRKEELLLGPGDLVRITALRQVLHPFTPIDAMEFVLKHMRPTASNADFLGSMNR
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcaggtcatcaagctcaatgacctgaagcggatgaagatcaccgacctctcgaagatg
gcccacgacgtgggcatcgaggggtaccagggcctgaagaagcaggacctcatcttcgcg
ctgctgggcggcatcgccgacaagcgcttcgaggtccacgcggaaggcgtgatggagctg
ctcagcgacggcttcggcttcctgcgcagcgcggacagcgactaccagcccagcccggac
gacatctacgtgtccccgtcgcaggtgcgccgcttcaacctgcgccccggcgacacggtg
acgggccccatccgccagccccgcgagggcgagcgcttcttcgcgctccagaaggtggac
aaggtcaacttcgcggacccgatgtcggacgcggcgcgcgagcgcatcctgttcgacaac
ctcacgccgctctatccgacgcgcaagctcaagctggagcacgagtcgtcggagatgacc
acgcgcatcatcgacatgttctgccccatcggcctgggccagcgctgcctcatcgtggcg
ccgccgaaggccggcaagacggtgctgctgcagaacatcgcgcacgccatcagccgcaac
cacccggacgtctacctcatcgtgctgctcgtggatgagcgcccggaagaggtgacggac
atggagcgcaacgtgcgcggcgaggtggtgtcctccaccttcgacgagcccgccacgcgc
cacgtgcaggtggcggagatggtcatcgacaaggccaagcgcctggtcgaacagaagtac
gacgtctgcatcctgctggactccatcacccgtctggcgcgcgcctacaacacggtggtg
ccagcgtccggcaagattctgtccggcggcgtggacgccaacgcgctccacaagcccaag
cgcttcttcggcgccgcgcgcaacatcgaggagggcggctcgctgaccatcatcggcacc
gcgctcatcgacaccggcagccgcatggacgaggtcatcttcgaggagttcaagggcacg
ggtaactccgaaatcgtcctggaccggaagctgatggagaagcgcatcttcccgacgctg
gacatcaacaagtccggcacgcgcaaggaagagctgctgctgggcccgggcgacctggtg
cgcatcaccgccctgcggcaggtgctccacccgttcaccccgattgacgcgatggagttc
gtgctcaaacacatgcggcccaccgcgtcgaatgcggacttcctcggctcgatgaaccgg
tag
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