Methylobacterium fujisawaense: ABC766_00795
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Entry
ABC766_00795 CDS
T10654
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mfuj Methylobacterium fujisawaense
Pathway
mfuj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mfuj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ABC766_00795 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mfuj03400
]
ABC766_00795 (mfd)
Enzymes [BR:
mfuj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABC766_00795 (mfd)
DNA repair and recombination proteins [BR:
mfuj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ABC766_00795 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_16
MFD_D3
SecA_DEAD
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
XAP10329
LinkDB
All DBs
Position
complement(117878..121474)
Genome browser
AA seq
1198 aa
AA seq
DB search
MAKPQPKPPAPAAKPQVARFALPKSSALARAIDALKRGDSPVLANAPEGFDALALADLAR
ALAPTVDAPAVLVHVARDSGRSASFQAALGFVAPEMDVMSLPAWDCQPYDRVSPTTATAA
ARMTALARLARTRSAEDRPRILCTTVNALVQRVPPRTHIAKEAFSAAIGNVVSMDDVVAW
VEANGFLRTGTVRDTGEYAVRGGILDLSPPGLAAPIRLDFFGDTLESIRAFDPETQRTTG
QLRSLDLMPMSEVQLTTETIRRFRQGYIQSFGAATRDDRLYETVSEGRRYAGLEHWMPLF
YDHLDTLFDYLGGVPLVFDPQVEDAAAERISLVQDYYQAREGAMKTPQAGVAPYKPLPPR
ALYLTPNELKERIATATVARLTPFAQPESTERAVIDCGAKAGRSFAPERADENASVFDAA
VAHIRDLQGSGHHVILGAWSDGSRDRLCGVLTDHGLKKPVAITRLTDVYALKRGTDAAVA
VWGLEAGFTAGELAVVSEGDILGDRLVRQKRKAKRPQDVILEVQALQPGDLVVHADHGIG
RFVGLKTIHAAGAPHDCLELQYTGGLLLLPVENIELLTRYGSEDSEVALDRLGGGAWQAR
KAKMKRRILEMAGELIKVAAQRFVRKAPALKAPEGLYGEFAARFPFEETEDQANAIDAVL
DDLNAGRPMDRLVCGDVGFGKTEVALRAAFAAAISGKQVAVIVPTTLLARQHYRTFAERF
KGLPVQVAQLSRFASAGEMKQTRAGLIAGTVDIVVGTHALLAKNIAFKDLGLIIVDEEQH
FGVAHKERLKALQADVHVLTLSATPIPRTLQLAMTGVRELSIIATPPVDRLVVRTFVTPF
DPLTIREALLRERYRGGQSFYVVPRIEDLAEVKKFLDAEMPEIKVAVAHGQMAAGQLEDV
MTAFYEGKFDVLLSTTIVESGLDIPTANTLIVHRADMFGLAQLYQLRGRVGRSKARAYAL
FTTPANRQLTAQAEQRLKVLQSLDTLGAGFQLASHDLDIRGAGNLLGDAQSGHIKEVGYE
LYQQMLEDAVTALKAGIEDVPEEAWSPTIALGAPVTIPETYVEDLGARLALYRRLATLQD
DAEMESFGAELIDRFGPLPPEVEQLLKIGTIKILCLKANVEKVEAGPKGVVVHFRDRSYA
NPQGLVAYVAEQASFAKVRPDMSVVFVRELNTVPARLKTATEVLRSLVKIAERGKKAA
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcctcagccgaagccccccgcccccgccgccaagccgcaggtcgcgcgcttc
gccctgccgaaatcctcggcgctcgcccgggcgatcgacgccctgaagcgcggcgacagc
ccggtcctggcgaacgccccggagggcttcgacgcgctggcgctcgccgacctcgcccgc
gccctggcgcccaccgttgacgcgccggccgtgctggtccacgtggcgcgggattccgga
cgctcggcctcgttccaggcggcgctcggcttcgtcgcgcccgagatggacgtgatgagc
ctgccggcctgggactgccagccctacgaccgggtctcgccgaccacggccacggccgcc
gcccggatgacggcgctcgcccgcctcgcccgcacccgctccgccgaggaccgcccgcgg
atcctctgcaccacggtcaacgccctggtgcagcgggttccgccccgcacccacatcgcc
aaggaggcgttctcggcggcgatcggcaacgtcgtgtccatggacgacgtggtcgcctgg
gtcgaggccaacggcttcctgcgcaccggcaccgtgcgcgacaccggcgagtatgcggtg
cgcggcggcatcctcgacctgtcgccgccgggcttagccgcgccgatccgcctcgacttc
ttcggcgacacgctggaatcgatccgcgccttcgatccggagacgcagcgcaccaccggg
cagctccgctcgctggacctgatgccgatgagcgaggtccagctcaccaccgagacgatc
cggcgcttccgccagggctacatccagagcttcggcgcggcgacccgggacgaccggctc
tacgagaccgtgagcgaggggcgccgctacgccggcctcgagcactggatgccgctgttc
tacgaccacctcgacacgctgttcgactatctcggcggcgtgccgctggtcttcgacccg
caggtcgaggacgccgccgccgagcggatcagcctcgtccaggattattaccaggcccgc
gagggcgcgatgaagacgccgcaggccggcgtcgccccctacaagccgctgccgccccgg
gccctctacctgacgccgaacgagctgaaggagcggatcgccaccgccacggtggcgcgg
ctgacgcccttcgcgcagcccgaatccacggagcgcgccgtgatcgattgcggcgccaag
gccgggcggagcttcgcccccgagcgggccgacgagaatgccagcgtgttcgacgccgcg
gtggcgcatattcgcgacctccagggatccggtcatcacgtgatcctgggcgcctggtcc
gacggatcccgcgaccggctctgcggcgtgctcaccgaccacggcctcaagaagccggtg
gcgatcacccggctcaccgacgtctacgcgctgaagcgcggcaccgacgcggcagtggcc
gtctggggcctggaggcgggcttcaccgcgggcgaactcgcggtggtctccgagggcgac
atcctgggcgaccggctggtccgccagaagcgcaaggccaagcggccccaggacgtgatc
ctggaggtgcaggcgctccagcccggcgacctcgtggtccatgccgaccacggcatcggc
cggttcgtcggcctcaagacgatccacgccgcgggtgccccgcacgattgcctggagctg
caatacaccggcggcctgctgctgctgccggtggagaatatcgagctcctgacccgctac
ggctcggaggattccgaggtcgccctcgaccggctcggcggcggcgcgtggcaggcccgc
aaggccaagatgaagcgccgcatcctcgagatggcgggtgaattgatcaaggtcgcggcc
cagcgcttcgtccggaaggcgccggccctcaaggcgccggaggggctctacggggaattc
gccgcccgctttccgttcgaggagaccgaggaccaggccaacgccatcgacgcggtgctg
gacgacctcaatgccggccggccgatggaccggctggtctgcggcgatgtcggctttggc
aagaccgaggtggctttgcgcgccgccttcgcggcggcgatctccggcaagcaggtggcg
gtgatcgtccccacgacgctgctggcccgccagcactaccggaccttcgcggagcgcttc
aaaggattgccggtccaggtggcgcagctctcccgcttcgcctccgccggggagatgaag
cagacgcgggcggggctcatcgccggcacggtcgacatcgtggtcggcacccacgccctc
ttggccaagaacatcgccttcaaggatctcggcctgatcatcgtggacgaggagcagcat
ttcggcgtcgcccacaaggagcggctgaaggcgctccaggccgacgtccacgtgctgacg
ctgtcggcgacgccgatcccgcgcacgctccagctcgccatgacgggggtgcgcgagctc
tcgatcatcgcgacgccgccggtggaccggctggtggtgcgcaccttcgtgacacccttc
gacccgctgaccatccgggaggccctgctgcgcgaacgctaccgcggcggccagtccttc
tacgtggttcccaggatcgaggatctggcggaggtcaagaaattcctcgacgccgagatg
cccgagatcaaggtcgcggtggcccacggccagatggcggcgggccagctcgaggacgtg
atgacggccttctacgagggcaagttcgacgtgctgctctcgaccacgatcgtggaatcg
ggcctcgacatccccaccgccaacacgctgatcgtccaccgggccgacatgttcgggctg
gcccagctctaccagctgcgcggccgggtcggtcgctcgaaggcccgggcctacgcgctg
ttcacgaccccggcgaaccgccagctcaccgcccaggccgagcagcgcctcaaggtgctc
cagagcctcgacaccctgggcgcgggcttccagctcgcgagccacgatctcgacatccgc
ggcgccggcaacctgctcggcgacgcgcagtccggccacatcaaggaggtcggctacgaa
ctctaccagcagatgctggaggacgcggtgacggcgctcaaggccggcatcgaggacgtg
cccgaggaggcgtggtcgccgaccatcgcgctgggcgccccggtgaccatcccggagacc
tatgtggaggatcttggcgcgcggctcgcgctctaccggcgcctcgccaccctccaggac
gatgccgagatggagagcttcggcgccgagctcatcgaccggttcgggccgctgccgccg
gaggtggagcaactcctcaagatcggcacgatcaagatcctctgcctcaaggcgaatgtc
gagaaggtcgaggccgggccgaagggcgtggtggtccatttccgcgaccgctcctacgcc
aacccgcaggggctcgtcgcctacgtggccgagcaggcctccttcgcgaaggtgcggccc
gacatgagcgtcgtgttcgtgcgcgagctgaatacggtcccggcccggctcaagaccgcc
accgaggtgctgcgcagcctcgtgaagatcgccgagcgggggaagaaggcggcgtaa
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