Methylobacterium fujisawaense: ABC766_15255
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Entry
ABC766_15255 CDS
T10654
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mfuj Methylobacterium fujisawaense
Pathway
mfuj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfuj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABC766_15255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfuj03019
]
ABC766_15255
03009 Ribosome biogenesis [BR:
mfuj03009
]
ABC766_15255
Enzymes [BR:
mfuj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ABC766_15255
Messenger RNA biogenesis [BR:
mfuj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABC766_15255
Ribosome biogenesis [BR:
mfuj03009
]
Prokaryotic type
rRNA processing factors
ABC766_15255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
XAP12961
LinkDB
All DBs
Position
3205970..3209044
Genome browser
AA seq
1024 aa
AA seq
DB search
MANKMLIDAMHPEETRVVTVHGSRVEEFDFEAANRRQLRGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFNEIHPDYYQIPLADRQALLEEDARDAEEHREREERRRRSPRRSRGRRAE
ARARGADETVSAEDGHEASQTEDQAEIRTEAGFDPAAEPDTLAEHPEAVREALASETAAG
DIPVAQDEPARDEPAQAAEPAAEAPFDAAPAEAAPAEAQAAHDMAGPVADDAAAEQDAPV
EAEARIAVAGALTVAEAPAESLAEETAEPADADEADDASDEDDEESDDEDEDEDESEDDE
DESDEDEDESDEDSDDPDAEPKIAQVGGNGDALAEIPERPRHYRRQYKIQEVIKRRQIIL
VQVVKEERGTKGAALTTYLSLAGRYSVLMPNTGRGGGISRKITSAADRKRLKEVVQDLEV
PEGMGVILRTAGASRSKPEIARDFEYLMRLWESVRELTLTSMAPALVYEEGSLIKRAIRD
LYNKDLDEVLVAGEDAYREAKDFMRMLMPGQSKVVKPYRDPTPIFARFGVEQQLDAMFSS
HVSLKSGGYLVINPTEALVSIDVNSGRATREHDIEDTALKTNLEAAEEVARQLRLRDLAG
LIVIDFIDMEEKRNNRAVEKKLNECLKNDRARIQVGRISPFGLMEMSRQRIRTGVLESSS
IPCAHCGGSGFVRATASVALHILRSIEEALLKSASHNLVLRTRTEVALYILNQKRGHLRE
LEMRFGVTITIAADERLAATAAFQLDRGEPAQRAEGPVTGVRAQAISPTTEFEDEDEEAD
EVEAEVEADAEGEAEEGRAETREEATREEGEGRRRRRRRRRRGGRQDGRAEDDRGDDDRQ
EGERSDEDGRDEDWDGEEPAAAEAPAEAVAAEAGETDEAVAGPDEAARAEDEGGRRRRRG
RRGGRGRSEGRTRDATETEDAPEAVGETVALSAEEPVSAQAVAEAVEAAPAAGRTETAVD
LPVAEAEAPAPADREPAAAPDAATAGPAEVPAEPVAVVLTPPADPDRPKRAGWWSRTKAA
LTGE
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaaaatgctgatcgacgcgatgcacccggaggagacccgggtcgtcacggtc
cacgggtctagggtcgaggagttcgatttcgaagccgccaaccggcgtcagctgcgcggc
aacatctatctcgccaaggtgacccgggtggagccgtcgctccaggcggcgttcgtggag
tatggcggcaaccgccacggcttcctggccttcaacgagatccaccccgactactaccag
atcccgctcgccgaccggcaggcgctcctcgaggaggacgcccgcgacgccgaggagcac
cgcgagcgcgaggagcgccgccgccggtcgccgcgccgctcccgcggccgccgcgccgag
gcccgcgcccgcggcgccgacgagaccgtgagcgccgaggacgggcacgaggcgtcccag
accgaggatcaggccgagatccggacggaagccggtttcgatccggccgccgagcccgat
acgctcgccgagcatcccgaggccgtgcgggaggccctcgcctccgagaccgcggccggc
gacatccccgtggcgcaggacgagccggcacgggacgagccggcgcaggccgccgagccg
gcggccgaggcgccgttcgacgctgcccccgccgaggccgcccctgccgaggcgcaggcg
gcgcacgacatggccgggccggtcgctgacgacgccgccgccgagcaggacgccccggtc
gaggccgaggcccgcatcgccgtggcgggggcgctgaccgtcgccgaagcgccggccgag
tccctcgcggaggagaccgccgagccggcggacgccgacgaggcggatgacgcgtccgac
gaggacgacgaggaatccgacgacgaggatgaggacgaggacgagtcggaggacgacgag
gacgagtccgacgaggatgaggacgagtcggacgaggattccgacgatcccgacgccgag
cccaagatcgcccaggtcggcggcaacggcgacgccctggccgagatccccgagcggccc
cgccactaccgccgccagtacaagatccaggaggtgatcaagcgccgccagatcatcctg
gttcaggtggtcaaggaggagcgcggcacgaagggcgcggcgctcaccacctacctgtcg
ctcgccggccgctactcggtgctgatgcccaataccggtcgcggcggcggcatctcccgg
aagatcacctcggcggccgaccgcaagcgcctcaaggaggtcgtgcaggatctggaggtg
cccgaagggatgggcgtcatcctgcgcaccgccggcgcctcgcgctccaagcccgagatc
gcccgcgacttcgagtacctgatgcggctgtgggagtcggtccgcgagctgacgctgacc
tcgatggcgcccgcgctggtctacgaggaaggctcgctgatcaagcgcgccatccgcgac
ctgtacaacaaggatctggacgaggttctggtcgccggcgaggacgcctaccgcgaggcc
aaggacttcatgcggatgctgatgcccggccagtccaaggtcgtgaagccctaccgcgac
ccgacgccgatcttcgcccgcttcggcgtcgagcagcagctcgacgcgatgttctccagc
cacgtctcgctgaagtccggcggctatctggtgatcaacccgaccgaggccctggtctcg
atcgacgtgaactcgggccgcgccacccgcgagcacgacatcgaggacaccgccctcaag
acgaacctggaggccgccgaggaggttgcccgccagctgcgcctgcgcgacctcgcgggc
ctgatcgtcatcgacttcatcgacatggaggagaagcgcaacaaccgcgccgtcgagaag
aagctgaacgagtgcctgaagaacgaccgcgcccgcatccaggtcggccggatctcgccc
ttcggcctcatggagatgagccgccagcgcatccgcacgggcgtgctcgaatcctcctcg
atcccctgcgcccattgcggcggctcgggcttcgtgcgcgccaccgcctcggtggccctg
cacatcctgcgctccatcgaggaggcgctgctcaagtcggcgagccacaacctcgtgctg
cggacccgcaccgaggtcgccctctacatcctcaaccagaagcgcgggcacctgcgcgag
ctggagatgcgcttcggcgtgaccatcacgatcgcggccgacgagcggctggccgccacc
gcggccttccagctcgaccgcggcgagccggctcagcgcgccgagggtccggtgacgggc
gtgcgcgcccaggcgatctcgcccaccacggagttcgaggacgaggacgaggaggccgac
gaggtcgaggccgaggtcgaggcggatgccgagggcgaggccgaggagggccgtgccgag
acgcgcgaggaggcgacgcgcgaggagggtgaaggccgccgccgccgccggcgccgccgc
cgccggggtgggcgtcaggacggtcgcgccgaggacgatcgcggcgacgatgatcgccag
gagggcgagcgctcggacgaggacggtcgggacgaggactgggacggcgaggagccggcc
gcagccgaggcgccggccgaggccgtcgcagccgaggccggggagaccgacgaggccgtg
gccggccccgacgaggcggcccgcgccgaggacgagggcggacgccgccgccgccgcgga
cgccgcggcggtcgcggacggagcgagggccgcacgcgggacgccaccgagacggaggat
gctcccgaggcggtgggcgagacggtggccctgtcggcggaagagccggtgagcgcccag
gcggtggcggaggcggtcgaggccgccccggcggccggccgcaccgagaccgccgtggat
ctgccggtggcggaagccgaagcccctgcgccggccgaccgggagcccgccgctgcgccg
gacgccgcgaccgctggcccggcggaggtccccgcggagcccgtggcggtggttctgacg
ccgcccgccgatccggaccgtcccaagcgcgcgggctggtggtcgcgcaccaaggccgct
ctgacgggcgaatga
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