Megamonas funiformis: GXM21_02565
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Entry
GXM21_02565 CDS
T06475
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
mfun
Megamonas funiformis
Pathway
mfun03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mfun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
GXM21_02565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mfun03400
]
GXM21_02565
Enzymes [BR:
mfun01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
GXM21_02565
DNA repair and recombination proteins [BR:
mfun03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GXM21_02565
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_30
AAA_19
HHH_RecD2
SH3_13
UvrD_C_2
OB_YrrC
HHH_5
Viral_helicase1
AAA_11
HHH
AAA_22
PIF1
HHH_8
HHH_2
HHH_3
PhoH
nSTAND3
NAT10_TcmA_helicase
T2SSE
AAA_12
AAA
TsaE
RecR_HhH
AAA_28
AAA_16
IMS_HHH
UvrD-helicase
NTPase_1
RsgA_GTPase
MobB
AAA_29
NPHP3_N
AAA_5
SLFN-g3_helicase
AAA_25
Mg_chelatase
MeaB
ABC_tran
UvrD_C
TrwB_AAD_bind
Motif
Other DBs
NCBI-ProteinID:
QIB59309
LinkDB
All DBs
Position
complement(516710..518875)
Genome browser
AA seq
721 aa
AA seq
DB search
MEKICGTVDTIIFASQDNRFTVLKLSPEKLSTQITVTLNGIAPLIGQLLEIEGEWVKHPK
FGQQFKATTYKTVAPTEISGIEKFLASGAINGIGPAMAKKIVAEFGEKTLEIIAKSPNEL
LKVPGIGKKTAEKISASYLEQSELTEIMVWLENHGISNTYAGKIFAKYGSFAIDIMEKDI
YRLFQDIEGIGFLTADKLAFNLGIQREDKRRIISGIDYALMQLCNNGHCCIPEMALVDKT
AKILQVNNQIIFTILKERIDNGSLNTEVVGGETLIYPPYLYYAEKKVATRLLQLQQATEP
LSEDNLSLFIKVWEKDNQIQLAQKQKEAIKACLHHGVLVLTGGPGTGKTTVIKGILSILK
AQGLKIRLAAPTGRAAKRLSETTGQKALTIHRLLEANNLAQDDNLQLGFSKDIDDQLDAD
VIILDEVSMVDIVLMHHFLNAVPDGCRIILVGDTDQLPAVGPGSVLKDIIRSQKIPAIRL
DEIFRQAQTSMIIQNAHIINAGRLPDLRKQYSDFVFYELNDDTSITQKILDLCTKDLPHE
GFDVLKDVQVLSPMHRFLCGVENLNLMLQEQLNPKKNQDELKYSSQTFRVGDKVMHIRNN
YQKNVFNGDIGFIQDINNEKLTVDYFDHIVTYEKNELNELTLAYASSVHKSQGSEYKVVI
IPLSTSHYIMLQRNLLYTAITRAKQKVIIIGSKKALMTAVQSNRTQKRYTLLAERLAHKL
I
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaatatgtggaacagtagacacgattatttttgccagtcaagataatcgcttc
actgttttaaaattatcaccagaaaaactttctacacagataacagttaccctaaacggc
atagctccactcattggacaactattagaaattgaaggggaatgggtaaagcaccctaaa
tttgggcaacagtttaaagctacgacttacaaaactgttgctcctacagaaatatccggc
attgaaaaattcttagcttctggggcaatcaacggcattggccctgccatggcaaagaaa
atagtcgctgaatttggcgaaaagactttagaaataattgctaaatcaccaaatgaatta
ttaaaagttcccggtattggcaaaaaaacagcagaaaaaatatccgcttcttatcttgaa
caaagtgaactcactgaaatcatggtttggctagaaaatcatggtatatccaatacttat
gcaggtaaaatctttgctaaatatggttcttttgcgatagatatcatggaaaaagatatt
tatcgcttatttcaagatatcgaaggtataggctttttaacagctgataaactcgctttt
aatcttggcatacaaagagaggataaacgacgcataatctcaggtatagattatgcttta
atgcaactttgcaacaatggtcattgctgtattcctgaaatggctcttgtcgataaaaca
gcaaagatattgcaagtaaataatcaaatcatcttcactattttaaaagaacgcattgat
aatggctctttaaatactgaagtagttggtggcgaaactttaatttatccgccatatctt
tattatgccgaaaaaaaagttgctacgcgtctacttcaattacaacaagcaactgagcct
ttatcagaagataatctttctttatttatcaaagtatgggaaaaagacaatcaaatccaa
cttgcacaaaaacaaaaagaagccatcaaagcttgtcttcatcacggagttttagtcctt
actggtggtcctggtactggtaaaacgactgtaatcaaaggcatcttatctattttaaaa
gcccaaggattaaaaattcgcctagcagcaccaactggacgagctgcaaaacgcttaagc
gaaacaacaggacaaaaagctttaactatccatcgcttgctagaagcaaataatttagct
caagatgataatttacaattaggctttagcaaagatatcgatgaccaattagatgctgat
gtcatcatcttagacgaagtttctatggtggatatagtcctcatgcaccattttctaaat
gctgtaccagatggttgtcgcatcatcttagtcggtgatacagaccaacttcctgctgta
ggccctggatctgtacttaaagatatcattcgttcgcaaaaaatccctgccattcgctta
gatgagattttccgccaagctcaaacaagcatgattatccaaaatgcacatatcataaac
gctggtagattacctgatcttcgcaaacaatacagcgattttgtcttttatgaattaaat
gacgatacttccattacacaaaaaatccttgatttatgtactaaagatttacctcatgaa
ggttttgatgttctcaaagacgtacaagttttatctcctatgcatcgctttttatgtggc
gtagaaaatttaaatctaatgcttcaagaacaattaaatcctaagaaaaatcaagatgaa
ttaaaatattcttcacaaacattccgtgttggcgataaagtcatgcatattcgcaataac
taccaaaaaaatgtatttaatggcgatattggttttatccaagatatcaacaacgaaaaa
ttaactgtagattattttgaccatattgttacctatgaaaaaaatgaactaaacgaatta
actctagcttatgcctcaagtgtgcataaaagtcaaggcagtgaatataaagtagtcatc
attcctttatcaacaagtcactacatcatgctccaacgaaatttactctatacagctatc
accagagccaaacaaaaggtcatcatcattggctcgaaaaaagcattgatgactgctgtt
caaagcaatcgaacacaaaaaagatatacactacttgctgaacgtttagcccataaatta
atttaa
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