Megamonas funiformis: GXM21_02605
Help
Entry
GXM21_02605 CDS
T06475
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mfun
Megamonas funiformis
Pathway
mfun03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mfun00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GXM21_02605 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mfun03021
]
GXM21_02605 (rpoC)
03400 DNA repair and recombination proteins [BR:
mfun03400
]
GXM21_02605 (rpoC)
Enzymes [BR:
mfun01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GXM21_02605 (rpoC)
Transcription machinery [BR:
mfun03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GXM21_02605 (rpoC)
DNA repair and recombination proteins [BR:
mfun03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GXM21_02605 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QIB59317
LinkDB
All DBs
Position
529915..534078
Genome browser
AA seq
1387 aa
AA seq
DB search
MLDVNNFDSMRIGLASPEKIREWSYGEVKKPETINYRTLKPERDGLFCERIFGPTRDWEC
HCGKYKRIRYKGIVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDV
SPRSLEKVLYFASYIVLDPGDTPLIKKQLLSENEYREYYDKYGSSFKVGMGAEAVKQLLE
ELDLDKMNKELREELRTSSGQRKVRAIRRLEVVEAFRKSGNKPSWMILDVVPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRAVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKE
MALELFKPFVMKKLVNSGLAHNIKSAKRMVERIRPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPVLTEGRALKLHPLACTAYNADFDGDQMAIHLPLSAEAQAEARILMLAANHIL
APKDGGPIITPSQDMVLGSYYLTILRPNAQGEGKVFTGINEAILAHQHKNLQLQALIQVR
MEGYGLVKTTLGRMIFNEILPPEIRDFYQVTKVSLEADTPEAREALIKGLKGKKMAEPIV
NSEGKEIVPADTAVDAGYIKNLLASDAKEAIVHGGNSGQWYLGYKTGKKELGKLVARCFE
TFGGSKTAEVIDNVKNLGYHYACLAGMTVAISDIIVPPEKKEILAATEKVVNRVERDYNR
GLITEDERYKKVVKLWSDATDDVADAMMANMDTFNNIFMMADSGARGNRQQMRQLAGMRG
LMADPSGKIIDLPIKANFREGLTVSDYFISSHGARKGLADTALRTADSGYLTRRLVDVAQ
DVIVREDDCDVVGINLVRERAKLAASSSAAIKELGDSLKGRVLANDIVSPKTGEVLYAAD
TTLDEEALNTIGEYNVSEIVLKGSAIYEGLNSMSTETIALGAPEENVRKSIKHAMMHEML
GKNTTDAVYDSTGAEIIPANTPLTEEYIEAVLNSDAKEVKVRNNNIRGIEVEAIKEGNGI
IESLEDRIVGRVLAEDIIDPATGEKIASLNETVTPALAKAICKVREKVSIRSVLTCKSQL
GVCIKCYGQDLATANQVEVGEAVGIIAAQSIGEPGTQLTMRTFHSGGVASDEDITQGLPR
VEELFEARKPKHHAIIAEIEGTVLISEDKEMRIVTITPDEGESREYLIPYGSRLIVKNGA
RIKPGDKITEGSINPHDILRICGLRETQRYLVYEVQKVYKSQGVGINDKHIEVMVRQMLH
KVKIEDSGDTDFLPGEYIDINSFESANAKAIEEGGIPAVARPILLGITKASLATDSFLSA
ASFQETTRVLTDAAIKGKVDPLIGLKENVIIGKLIPAGTGMSRYRNINVVDLDAAEHEAQ
EETTVTE
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
ttgttagatgtaaataattttgattctatgcgcataggactagcttctccagaaaagatt
cgtgaatggtcttatggcgaagtaaaaaaaccagaaactatcaattatcgtactttaaaa
cctgaacgtgatggtttgttctgtgaaagaatttttggtcctacacgtgactgggaatgt
cattgcggtaaatacaaacgcattcgttataaaggtattgtctgtgaccgttgtggcgta
gaagtaactcgtgcaaaagtacgtcgtgaacgtatgggtcatatagagctcgctgcacca
gtatctcacatttggtactttaaaggcattccaagtcgtatgggtcttatcttagatgta
tcacctcgttctttagagaaagtattatactttgcttcttatatagtattagatccaggc
gatacacctcttattaaaaagcaacttttatccgaaaatgaataccgtgagtattatgat
aaatatggctctagcttcaaagtaggcatgggtgctgaagcggtaaaacagcttttagaa
gaattagatttagataaaatgaataaagaattacgtgaagaacttcgtacttctagcggt
cagcgtaaagttcgtgctattcgtcgcttagaagtagtagaagctttccgtaaatctggc
aataaaccatcttggatgattcttgatgtagtaccagttattccaccagaattacgtcca
atggttcaattagatggtggtcgttttgctacgtctgacttaaatgatttatatcgtcgt
gttatcaaccgtaataatcgtttaaaacgtttattagacttaggtgcaccagatattatc
gtgcgcaatgaaaaacgtatgcttcaagaagcagttgacgcacttatcgataatggtcgc
cgtggtcgtgctgtaacaggccctggtaaccgtccacttaaatctttaagtgatatgctc
aaaggtaaacaaggtcgtttccgtcagaacttattaggtaaacgtgttgactactctggt
cgttccgttatcgttgtaggtcctgaacttaaacttcatcaatgtggtttaccaaaagaa
atggctcttgaattattcaaaccatttgtaatgaaaaaacttgtaaattctggacttgca
cacaatattaaatctgcaaaacgcatggttgaacgtattcgtccagaagtttgggatgta
ttagaagaagttattaaagaacatccagttcttttaaaccgtgcccctacgcttcaccgt
cttggtattcaggcttttgaacctgtactcacagaaggtcgtgcacttaaattacatcca
cttgcttgtacagcttacaacgctgacttcgatggtgaccagatggctattcaccttcca
ctttcagcagaagctcaagcagaagctcgtattttaatgcttgctgctaaccacatctta
gcaccaaaagatggtggcccaattatcactccatctcaggatatggtacttggttcttac
tatttaacaatccttcgtccaaatgcacaaggagaaggaaaagtatttactggtataaat
gaagctattttagctcatcaacataaaaatcttcaattacaagcattaattcaggttcgt
atggaaggatatggccttgtaaaaacaactcttggtcgtatgattttcaatgaaattctt
cctcctgaaattcgcgatttctatcaagtaacaaaagtttccttagaagctgatacacca
gaagctcgtgaagctttaattaaaggcttaaaaggtaaaaagatggctgagccaatcgtt
aatagcgaaggtaaagaaatcgttccagccgatacagctgttgatgctggttatattaaa
aacttacttgctagtgatgctaaagaagctattgttcatggtggtaactctggacaatgg
tatctcggttacaaaacaggtaaaaaagaacttggtaaattagttgctagatgctttgaa
acatttggtggttctaaaactgctgaagtaattgataatgttaaaaacttaggttaccat
tatgcttgtcttgctggtatgacagttgctatctctgatattattgttccaccagaaaag
aaagaaattttggcagctacagaaaaagttgttaaccgtgttgaacgcgactataatcgt
ggtcttatcactgaagacgaacgttataagaaagttgtaaaactttggagcgatgctaca
gatgacgttgctgatgcgatgatggctaacatggatacattcaataatatcttcatgatg
gctgactccggtgcccgcggtaacagacagcagatgcgtcagctcgctggtatgcgtggt
cttatggctgatccatctggtaaaatcatcgacttaccaatcaaagcaaacttccgtgaa
ggcttaacagtgtctgattactttatttcttctcatggtgctcgtaaaggtcttgccgat
acagcacttagaacagctgactctggttacctcactcgtcgtcttgttgacgttgctcaa
gacgttatcgttcgtgaagatgactgtgacgttgtaggtattaacctcgtacgtgaacgt
gcaaaactcgctgcatcttctagcgctgcaatcaaagaacttggcgatagcttaaaaggc
cgtgtgcttgcaaatgatatcgttagtccaaaaacaggcgaagttctttatgctgcagat
actacacttgatgaagaagctcttaatactattggtgaatataatgttagcgaaatcgta
ctcaaaggttccgctatttatgaaggactcaactccatgtccactgaaacaatagctctt
ggtgctcctgaagaaaatgtacgtaaatccattaaacatgctatgatgcatgaaatgctt
ggtaaaaatacaactgatgctgtttatgatagcacaggcgcagaaatcattcctgcaaat
acaccacttacagaagaatatatcgaagctgtattaaatagcgatgcgaaagaagttaaa
gttcgcaataacaacattcgtggtatcgaagttgaagctattaaagaaggtaacggtatt
atcgaatctcttgaagatcgtatcgtaggacgtgtattagctgaagatatcattgatcct
gctactggtgaaaaaatcgcttctcttaacgaaactgttacaccagctcttgctaaagca
atttgtaaagtacgtgaaaaagtttctattcgtagcgtactcacatgtaaatctcagctt
ggtgtatgtattaaatgttatggtcaagaccttgctacagctaatcaggttgaagttggt
gaagcagttggtattatcgctgctcaatctatcggtgaacctggtacacagcttacaatg
cgtacattccactccggtggggttgccagtgacgaagatatcacacagggtcttccacgt
gttgaagaattgttcgaagcaagaaaaccaaaacatcatgctatcattgctgaaatcgaa
ggtactgttctcatttccgaagataaagaaatgcgcatagttactattacaccagatgaa
ggcgaatctagagaatatttaattccttatggttctcgtctcattgttaaaaatggtgca
agaattaaacctggtgataaaatcactgaaggttctattaatccacatgatatcttacgt
atttgtggtttacgtgaaactcagcgttacctcgtatacgaagtacaaaaagtatataaa
tctcagggtgttggtatcaacgataaacatattgaagttatggttcgtcagatgcttcat
aaagttaaaattgaagattctggtgacactgatttcctccctggcgaatatattgatatc
aatagctttgaatctgcaaatgctaaagctattgaagaaggcggtattccagccgttgct
cgtccaatcctcttaggtattacaaaagcttccttggcaacagattccttcttatctgca
gcatcattccaagaaactactcgtgttcttactgatgcagctatcaaaggtaaggttgat
ccacttatcggtcttaaggaaaatgttatcatcggtaaattaattcctgctggtactggt
atgagtagatatagaaatattaatgtagtagatttagatgctgctgaacatgaagcacaa
gaagaaactacagttactgaataa
DBGET
integrated database retrieval system
