Megamonas funiformis: GXM21_04335
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Entry
GXM21_04335 CDS
T06475
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mfun
Megamonas funiformis
Pathway
mfun03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfun00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GXM21_04335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfun03019
]
GXM21_04335
03009 Ribosome biogenesis [BR:
mfun03009
]
GXM21_04335
Enzymes [BR:
mfun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GXM21_04335
Messenger RNA biogenesis [BR:
mfun03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GXM21_04335
Ribosome biogenesis [BR:
mfun03009
]
Prokaryotic type
rRNA helicases
GXM21_04335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Cas3-like_C_2
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
QIB59641
LinkDB
All DBs
Position
884953..886542
Genome browser
AA seq
529 aa
AA seq
DB search
MEEKIIKFEDMQLSKKVLNAVRDMGFEEPSPIQAQTIPLALEGHDVIGQAQTGTGKTAAF
GIPTIEQIDEKNKYIQALVLTPTRELAIQIAEEFNKIGKYKRVKTLPVYGGQMIDRQIRA
LRFGVKVVVGTPGRLIDHIRRNTIKLDHVKMLILDEADEMLDMGFIEDIEEIMSNVAQGE
NRQTLLFSATMPAPIEKLARSYMHNPQKVMISREQLTVPSVDQLYFETRDKFEGLCRVLD
IEDSGKYIIFCRTKKNVDDLQASLQVRGYMAGSLHGDMSQAQRDRVMRRFREGKLEILIA
TDVAARGIDIDDISHVINFDIPQDHESYVHRIGRTGRAGRTGIAVTFIEPKEYRQLKLIE
RMTKSRMIRGELPTPADVIERQREAIKERLLKTLNNNTYADYHLIISDIANEGFDYVDIA
AAALQLSIEGVKEKDDKVLDERFENTGGAPGMVRLFLNIGRKQGIRPQDIVRTFASEVDI
PGSIIGVINIYDKFTFVEVPKDIAEKVISVMHRNTIKGYKLNIEPAKGK
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
ttggaagaaaaaattattaaatttgaagatatgcaattaagtaaaaaggtattaaatgct
gttcgtgatatgggatttgaagaaccatctccaattcaagcacagactatacctttagcg
ttagaaggtcatgatgttataggacaagcccaaactggtacaggcaaaacagcagcgttt
ggtattccaactattgaacaaattgatgaaaaaaataaatacattcaagctttagtattg
actccaacacgtgagcttgctattcagattgcagaagaatttaataaaattggtaaatac
aaacgcgtaaaaactttacctgtatatggcggtcaaatgatagatcgtcaaattagagct
cttcgctttggggttaaagtagtagtaggtactccaggtagactcatcgaccatattcgt
cgcaatactataaaacttgaccatgtaaaaatgctcattttagatgaagctgatgaaatg
ctcgatatgggctttattgaagatattgaagaaatcatgtcaaatgtggcacaaggtgaa
aatcgtcagactttattattctctgctacaatgccagcaccaattgaaaaattagcgcgt
agctatatgcataatccgcaaaaagtaatgattagtcgtgaacaacttacagtgccatca
gttgaccaattatattttgaaactcgtgataaattcgaaggtctttgtcgtgtacttgat
atagaagatagcggtaaatatattattttctgccgtacaaagaaaaatgttgatgacctt
caagcttcactacaagttcgtggttatatggctggtagcttacatggtgatatgagccaa
gcacagcgcgaccgtgttatgcgtcgtttccgtgaaggaaaacttgaaattttaattgca
acagatgtggctgctcgtggtattgatatagatgatatcagccatgtaatcaattttgat
attccacaagaccatgaatcttatgtacatcgtatcggtcgtactggtcgtgctggtcgt
acaggtatcgctgttacattcattgaaccaaaagaatatcgtcaattaaaattaattgaa
cgcatgacaaaatctcgcatgatacgaggagaacttccaacacctgctgatgttattgaa
cgtcaaagagaagcaatcaaagaacgtttgttaaaaacattaaataataatacgtatgca
gattatcatttaattatttctgatatcgctaatgaaggttttgattatgtagatatcgca
gcagcagcgttacaactttctattgaaggcgtgaaagaaaaagacgataaagttttagat
gaacgttttgaaaacacaggtggagcacctggtatggtacgtttattcttaaatattggt
cgtaaacaaggtattcgtccacaagatatcgtgcgcacatttgcttcagaagttgatatt
ccaggtagcataattggtgtaatcaatatttatgacaaatttacttttgtggaagtgcca
aaagatatagctgaaaaagtaatatctgtaatgcacagaaatactattaaaggctataaa
ttaaatatcgaacctgcaaaaggcaaataa
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