Massilia forsythiae: HH212_06660
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Entry
HH212_06660 CDS
T08391
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mfy
Massilia forsythiae
Pathway
mfy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mfy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HH212_06660 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mfy03021
]
HH212_06660 (rpoC)
03400 DNA repair and recombination proteins [BR:
mfy03400
]
HH212_06660 (rpoC)
Enzymes [BR:
mfy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HH212_06660 (rpoC)
Transcription machinery [BR:
mfy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HH212_06660 (rpoC)
DNA repair and recombination proteins [BR:
mfy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HH212_06660 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Myosin_VII_N
Motif
Other DBs
NCBI-ProteinID:
QJD99746
UniProt:
A0A7Z2VUX8
LinkDB
All DBs
Position
complement(1553641..1557885)
Genome browser
AA seq
1414 aa
AA seq
DB search
MKALLDLFKQVQQNESFDAIKIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKSQIMSEDDYAAKYEEYGDDFTAFM
GAEGIRELLRSIDIDREAEALRVELKESKSEAKIKKYAKRLKVLEAFQRSGIKPDWMIME
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNKLELMGLATTIKAAKKLVEQQEPVVWDILEEVIKEHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA
RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYASREAINAKGEGMLFPDVSEVIRAYDNK
EVELATRITVRIVEHPKNEQGGFDRTVTRYETTVGRAILSEILPKGLPFSVLNRSLKKKE
ISKLINTSFRKCGLRATVVFADKLMQSGFRLATRAGISIAVDDMLIPDVKKTMIATAEAE
VKQIEQQYSSGLVTAGERYNKVVDIWGKTSDEVGKAMMDQLKVEPVTKRDGTQGTQESFN
AIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVVTEDDCGTSNGTHMKAMVEGGEVIEPLRDRIL
GRVAGTDIVNPETQETLYEAGTLLDEDMVEEIERVGIDEVKVRTPLNCDTRYGLCAKCYG
RDLGRGMLVNSGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTVRF
TATMRYVTNGKGAQIVISRSGEVLITDDHGRERERHKVPYGATLIVKDGMSVKAGTALAT
WDPLTRPIITEYGGTIRFENVEEGVTVARQVDDVTGLSTLVAIDPKRRGSGKTLRPQVKL
LNEEGQEVKIAGTEHAVTIGFQVGALIMVKDGQQASVGEVLARIPTESQKTRDITGGLPR
VAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMDGNKHEFLITKDKQVLVHDG
QVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQML
RRVQIVDAGDTDYIVGEQVERSELLEENDRMNAVAKLPAQYENVLLGITKASLSTDSFIS
AASFQETTRVLTEAAIMGKRDGLRGLKENVIVGRLIPGGTGLAFHRARKEKEAWEAEERQ
NLLQQEKANMAAELQAMEDQQQAAHAEQHHGDGE
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcactgctcgatctattcaagcaagttcagcaaaacgagagcttcgacgccatc
aagatcggcctggcgtcgcccgaaaaaatccgttcgtggtcgttcggcgaagtcaagaag
ccggaaaccatcaactaccgcaccttcaagccggagcgtgacggcctgttctgcgccaag
atcttcggtccgatcaaggactacgaatgcctgtgcggcaagtacaagcgcctgaagcac
cgcggcgtgatctgcgaaaagtgcggcgtcgaagtcacgctggccaaggtgcgccgcgag
cgcatgggccacatcgagctggcctcgccggtcgcccacatctggttcctgaagtcgctg
ccgtcgcgcctgggcatggtcctggacatgaccctgcgcgacatcgagcgcgtgctgtac
tttgaagcgtacgtggtcaccgacccgggcatgaccccgctcaagaagtcgcagatcatg
tcggaagacgactacgccgccaagtacgaagagtacggcgacgacttcaccgccttcatg
ggcgccgagggcatccgtgaactgctgcgctcgatcgacatcgaccgcgaagccgaagcc
ctgcgcgtcgagctgaaggaatcgaagtcggaagccaagatcaagaagtacgccaagcgc
ctgaaggtgctggaggcgttccagcgctcgggcatcaagccggactggatgatcatggaa
gtgctgccggtgctgccgccggaactgcgtccgctggtcccgctggacggcggccgtttc
gccacgtccgacctgaacgacctgtaccgccgcgtcatcaaccgtaacaaccgcctgaag
cgcctgatggaactgcgcgcgccggaaatcatcacgcgcaacgaaaagcgcatgctgcag
gaagcggtcgactcgctgctggacaacggccgtcgcggcaaggcgatgaccggcgccaac
aagcgtccgctgaagtcgctggctgagatgatcaagggtaaaggcggtcgtttccgccag
aacctgctgggcaagcgcgtcgactactcgggccgttcggtcatcgtggtcggtccgcag
ctgaaactgcaccagtgcggcttgccgaagctgatggccctggaactgttcaagccgttc
atcttcaacaagctggaactgatgggtctggctaccaccattaaggcggccaagaaactg
gtcgagcagcaggaaccggtggtctgggacatcctggaagaagtcatcaaggaacacccg
gtcatgctgaaccgtgcaccgaccctgcaccgtctcggtatccaggcgttcgagccggtc
ctgatcgagggcaaggcgatccagctgcacccgctggtgtgcgcggcgttcaacgccgac
ttcgacggcgaccagatggccgtccacgtgccgctgtcgatcgaagcgcagatggaagcc
cgcaccctgatgctggcatcgaacaacatcctgttcccgtcgaacggcgaaccgtcgatc
gtgccgtcccaggatatcgtgctgggcctgtactacgcatcgcgcgaggcgatcaacgcc
aagggcgagggcatgctgttcccggacgtgtcggaagtcatccgcgcgtacgacaacaag
gaagtcgagctggcgacccgcatcaccgtgcgtatcgtcgagcatccgaagaacgaacaa
ggcggcttcgaccgcaccgtgacgcgctacgagaccaccgtcggccgtgcgatcctgtcc
gagatcctgccgaaaggcttgccgttctcggtgctgaaccgctcgctgaagaagaaggaa
atctcgaagctgatcaacacgtcgttccgcaagtgcggcctgcgtgcgaccgtcgtgttc
gcggataaactgatgcagtcgggcttccgcctggcgacccgcgccggcatctcgatcgcc
gtggacgacatgctgatcccggacgtcaagaagaccatgatcgcgaccgccgaagcggaa
gtgaagcagatcgagcagcagtactcctcgggcctggtcaccgccggcgagcgctacaac
aaggtcgtcgacatctggggcaagacctcggacgaagtcggcaaggcgatgatggaccag
ctgaaagtcgagccggtcaccaagcgcgacggcacgcaaggcacccaggaatcgttcaac
gcgatttacatgatggccgactcgggcgcgcgcggttcggccgcccagatccgccagctg
gccggtatgcgcggcctgatggccaagccggacggctcgatcatcgaaacgccgatcacc
gcgaacttccgcgaaggcctgaacgtgttgcagtacttcatctcgacgcacggcgcccgt
aagggtctggccgacaccgcgctgaagaccgcgaactcgggttacctgacccgccgcctg
gtcgacgtgacccaggacctggtggtgaccgaagacgattgcggcaccagcaacggtacc
cacatgaaggcgatggtcgagggtggcgaagtcatcgagccgctgcgcgaccgtatcctg
ggccgcgtggccggcaccgacatcgtcaatccggaaacgcaggagaccctgtacgaagcc
ggcacgctgctggacgaagacatggtcgaggaaatcgagcgcgtcggcatcgacgaggtg
aaggtacgtaccccgctgaactgtgacacccgctacggcctgtgcgccaagtgctacggc
cgcgacctgggccgcggcatgctggtcaacagcggcgaggcggtcggtgtggtggcggcg
cagtcgatcggcgagccgggcacccagctgaccatgcgtaccttccacatcggtggtgcg
gcgtcgcgtgcggcggtggcctcgtcggtggaagccaagtcgaacggcacggtgcgcttt
accgcgaccatgcgttacgtgaccaacggcaagggcgcgcagatcgtgatctcgcgttcg
ggcgaagtgctgatcaccgacgaccacggccgcgagcgcgagcgccataaggtgccgtac
ggcgcgaccctgatcgtcaaggatggcatgtcggtcaaggccggcaccgccctggcgacc
tgggacccgctgacccgtccgatcatcaccgaatacggcggcaccatccgcttcgaaaac
gtggaagagggcgtgaccgtcgctcgccaggtggacgacgtgaccggcctgtcgacgctg
gtggcgatcgatccgaagcgccgcggttcgggcaagaccctgcgtccgcaggtcaagctg
ctgaacgaagagggccaggaagtcaagatcgccggcaccgagcacgccgtgacgatcggc
ttccaggtcggcgcgctgatcatggtcaaggacggccagcaggcatcggtgggtgaagtg
ctggcacgtatcccgaccgaatcgcagaagacccgcgatattaccggcggtctgccgcgc
gtggccgagctgttcgaagcccgttcgccgaaggatgccggcatgctggcggaagtcacc
ggtacggtggcgttcggcaaggagaccaagggtaagcagcgcctggaaatcaccgacatg
gacggcaacaagcacgagttcctgatcaccaaggacaagcaagtgctggtgcacgacggc
caggtggtgaacaagggcgagatgatcgtggacggcccggccgatccgcaagacatcctg
cgcctgctgggcattgaagcgctggcccgctacatcgtcgacgaagtgcaggacgtgtac
cgcttgcagggcgtgaagatcaacgacaagcacatcgaggtgatcgtgcgccagatgctg
cgccgcgtgcagatcgtcgacgccggcgacaccgactacatcgtcggcgagcaggtggag
cgttcggaactgctggaagagaacgaccgcatgaacgccgtcgcgaaactgccggcacag
tacgaaaacgtgctgctgggtattaccaaggcatcgctgtcgaccgactcgttcatctcg
gccgcatcgttccaggaaaccacccgcgtgctgaccgaagcggcgatcatgggcaagcgc
gacggcctgcgcggcctgaaggaaaacgtcatcgtcggccgcctaatcccgggcggcacc
ggcctggcattccaccgcgcgcgcaaggaaaaagaggcgtgggaagcggaagagcgccag
aacctgctgcagcaggaaaaggccaacatggctgccgaactgcaggcgatggaagaccag
cagcaggcggcgcatgccgagcagcatcatggcgatggcgagtaa
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integrated database retrieval system
