Massilia forsythiae: HH212_13345
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Entry
HH212_13345 CDS
T08391
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mfy
Massilia forsythiae
Pathway
mfy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HH212_13345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfy03019
]
HH212_13345
03009 Ribosome biogenesis [BR:
mfy03009
]
HH212_13345
Enzymes [BR:
mfy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HH212_13345
Messenger RNA biogenesis [BR:
mfy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HH212_13345
Ribosome biogenesis [BR:
mfy03009
]
Prokaryotic type
rRNA processing factors
HH212_13345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QJE00885
UniProt:
A0A7Z2VXF7
LinkDB
All DBs
Position
complement(3112222..3115656)
Genome browser
AA seq
1144 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKSNIYKGVITRIEPSLEACFVSY
GEDRHGFLPFKEVARSYFREGVDVRNCSIKEALREGQEIMVQVEKEERGNKGAALTSFIS
LAGRYLVLMPNNPRGGGVSRRVEGEERQELRETMDKLDLPQGMSVIARTAGIGRNVEELQ
WDLNYLMQLWRAIEGAGKSAPGAFLIYQESSLVIRAIRDYYQPDIGEILIDTDEIYEQAH
QFMSHVMPDMVHRVKRYSDDVPLFSRFQIEHQIETAYARTVPLPSGGAIVIDHTEALVSI
DVNSARATRGSDIETTAFNTNLEAADEVARQLRLRDLGGLIVIDFIDMEVAKNQREVEQR
LKDALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCSGTGHIRDTESSALQ
VLRIIQEEAMKENSATIHVQVPVDVAAFLLNEKRGEILKIENRHRITVILIPNKHLETPH
YKLERIKHDDPRLEDAGASYTLAESAETDMAYAKRQKEEAKPRQEAVVKTITPAQPAPMV
ERQPKPEPVAPAAQAPAAPPPPPPAPVEEGFFAKLRNFFFGRPAPIAPPPAPAAAPVKPA
EPAPAAAAAAERNSRGPRARNGRNPNGAGPNKGRERDERDPTAKAAPGEEGARTFDAEGK
PARPPRPPREQREPRPPREQREPREQAEAVGQSQVPGQVQGQIPAARAERAERPERAERP
ERGERPERAPRQPRERTERVERVERSPAMEARPDEVNFVQATTATTVTVASTGPNGEQEI
VREEIVKSVTSIGPNDDMELDANGEPRRRRRRGGRNRNRRDRDQVDGMDGESGDLDGAVP
AFTPVADEEAAKVQAEARAAARARAEKPAKVPATGPWPFPTAASVKAAAVKAHAEQAAAE
QAAAEKAAAAQAAAQAALQPASQPSLQAETAQHAAQPEGAVQAPAADVAPAAAAPAAVPA
AKGAWPFPTSQSVAEATARAAAAAQAAEPAPVAAAAPAAAAVPAQAAAVSQEPAAVPGQE
YAVDPAPAAAAPIPAPEQVADAALTATPVAPVAPVAQAMAAAPAAAVPADMPAVPVAAPA
AAAPADLDDMLSKAGLTLASTDPEKLRAAQEAAASVPVPVRTGRTRKPAPPPVDEPLVQV
DTRQ
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgtttaacgctacgcagcaagaggaactgcgcgtagcgatcgtcgat
ggccagaaactgatcgacatcgatatcgagaccgccggtcgcgaacagcgcaagtcgaat
atctacaagggcgtcatcacccgcatcgaaccctccctcgaagcctgcttcgtcagctac
ggcgaagaccgccacggctttttgcccttcaaggaagtcgcccgctcgtatttccgcgaa
ggcgtcgacgtgcgcaactgctccatcaaggaagcgctgcgcgaaggccaggaaatcatg
gtgcaggtcgagaaggaagagcgcggcaacaagggcgcggccctgacctcgttcatctcg
ctggccggccgctacctggtgctgatgccgaacaatccgcgcggcggcggcgtctcgcgc
cgggtcgaaggcgaagagcgccaggaactgcgcgagaccatggacaagctcgacctgccg
cagggcatgtcggtgatcgcccgcaccgccggcatcggccgcaacgtcgaagagctgcag
tgggacctgaactacctgatgcagctgtggcgcgcgatcgaaggcgccggcaagtcggcc
ccgggcgcgttcctgatctaccaggaatcctcgctggtcatccgcgccatccgcgactac
taccagccggacatcggcgagatcctgatcgacaccgacgagatctacgagcaggcgcac
cagttcatgagccacgtgatgcccgacatggtgcaccgcgtaaagcgctacagcgacgac
gtgccgctgttctcgcgcttccagatcgaacaccagatcgagaccgcctacgcgcgcacc
gtgccgctgccgtccggcggcgccatcgtcatcgaccacaccgaagcgctggtctccatc
gacgtcaactcggcgcgcgccacgcgcggctcggacatcgagaccaccgccttcaacacc
aacctggaagccgccgacgaagtggcgcgccagttgcgcctgcgcgacctgggcggcctg
atcgtgatcgacttcatcgacatggaagtggccaagaaccagcgcgaagtcgaacagcgc
ctgaaggatgcgctgcaccacgaccgcgcccgcgtccagatgggcaagatctcgcgcttc
ggcctgatggaactgtcgcgccagcgcctgcgtccgtcgctgtcggaaggctcgcacgtg
acctgcccgcgctgctcgggcaccggccacatccgcgataccgaatcgtccgccctgcag
gtgctgcgcatcatccaggaagaggcgatgaaggagaactcggcgaccatccacgtgcag
gtgccggtcgacgtggctgccttcctgctgaacgaaaagcgcggcgagatcctcaagatc
gagaaccgccaccggatcaccgtcatcctgatcccgaacaagcacctggaaaccccgcat
tacaagctcgagcgcatcaagcacgacgacccgcgcctggaagacgccggcgccagctac
acgctggcggagtcggccgagaccgacatggcctacgccaagcgccagaaggaagaagcc
aagccgcgccaggaagccgtcgtgaaaaccattaccccggcccagccggcgccgatggtc
gagcgccagcccaagccggaaccggtggccccggccgcccaggcgccggcagcgccgccg
ccaccgccgccggccccggtcgaggaaggcttcttcgccaagctgcgcaacttcttcttc
ggccgtccggcaccgatcgctccgccgcctgccccggccgcggcgccggtcaagccagcc
gagccggcgccggcggcggcagccgccgcggaacgcaacagccgcggtccgcgcgcgcgc
aacggccgcaatccgaacggcgccggtccgaacaagggacgcgaacgcgacgagcgcgac
ccgaccgccaaggccgcgccgggcgaggaaggcgccaggaccttcgacgccgaaggcaag
ccggcccgtccgccgcgtccgccgcgcgagcaacgcgaaccgcgcccgccgcgtgaacag
cgcgagccgcgtgagcaggccgaggcagtgggccaaagccaggtgccgggccaggtacag
ggccagatcccggcggcgcgtgccgagcgcgctgaacgccccgaacgcgccgagcgtccg
gaacgtggcgagcgcccggaacgcgcaccgcgccagccgcgcgagcgtaccgagcgcgtc
gaacgcgtggaacgcagcccggcgatggaagcccggccggacgaggtgaacttcgtccag
gccaccaccgcgaccaccgtcaccgtggcgtcgaccggtcccaacggcgaacaggaaatc
gtccgggaagaaatcgtcaagtcggtgacctcgatcggcccgaacgacgacatggaactg
gacgccaacggcgaaccgcgccgccgccgccgccgtggtggccgcaaccgcaaccgccgc
gaccgcgaccaggtcgacggcatggacggcgaatcgggcgacctggacggcgcggtgccg
gcctttaccccggtagccgacgaggaagccgccaaggtgcaggccgaagcccgcgccgcc
gccagggcgcgcgccgagaagccggccaaggtgccggcgaccggtccgtggccattcccg
accgccgcgtcggtcaaggccgccgccgtgaaggcgcatgccgagcaggctgcagcggaa
caggccgcggccgagaaggctgccgctgcccaggctgcggcgcaggccgctttgcagcct
gcttcccagccttccctgcaggccgagacggcgcagcatgccgcgcagcctgagggcgca
gtgcaggcgccggcagccgacgtggcgccggccgccgcagcaccggccgcggtaccggcc
gccaagggcgcatggccgttcccgacctcgcagtcggtggccgaggcgacggcgcgcgcc
gccgccgccgcccaggccgccgagccggcgccggtcgccgcagccgctccggctgccgcg
gcggtgcctgcacaggctgccgccgtcagccaggaaccggctgccgtaccgggccaggag
tatgccgtcgatccggcgccggccgccgccgcgccgattccggcgccggaacaggtggcc
gacgctgccttgaccgcgacgccggttgcaccggtcgcgccggttgcgcaggcaatggca
gcagccccggctgcagcggtgccggccgacatgccggccgtgccagtggccgccccggca
gccgccgcgcccgcagacctggacgacatgctgtccaaggccggcctgaccctggcgtcg
accgatccggaaaagctgcgcgcggcccaggaagccgccgccagcgtgccggtgccggta
cgcaccggccgcacccgcaagccggccccgccgccggtcgacgagccgctggtccaggtg
gatacccgccagtga
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