Massilia forsythiae: HH212_15430
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Entry
HH212_15430 CDS
T08391
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
mfy
Massilia forsythiae
Brite
KEGG Orthology (KO) [BR:
mfy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mfy03009
]
HH212_15430 (rlmD)
Enzymes [BR:
mfy01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
HH212_15430 (rlmD)
Ribosome biogenesis [BR:
mfy03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
HH212_15430 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRM5-TYW2_MTfase
Methyltransf_25
MTS
Methyltransf_15
RrnaAD
Methyltrans_SAM
TRAM
Cons_hypoth95
Methyltransf_23
Methyltransf_32
Methyltransf_11
UPF0020
CMAS
PCMT
Motif
Other DBs
NCBI-ProteinID:
QJE01254
UniProt:
A0A7Z2ZTD5
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All DBs
Position
3601316..3602722
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AA seq
468 aa
AA seq
DB search
MQETFIDIKSLDMDARGVGHLQNEDGTQGKVIFVEGALPGERVSFETLRKKKNWESGRMV
TLQRASAMRVTPKCPHFWHCGGCSMQHLEASSQVAMKQRVLEDNLWHIGKTKAEHIMRPM
YGPTWEYRLRARLSVRWVPKKGTVLVGFHERHSSYVADMTSCEIIPRHLSNMLVPLRELV
GALSIYQQMPQIEVAVGEDVTVLVLRVMAPLSAADERLVKAFADQWHIQWWLQPKGPDSA
YPYYPLGKELYYTLPEFGIRMPFKPTDFTQVNHQINRLLVHKALRLLEVAPGERVADLFC
GLGNFTLPLATQAREVVGIEGSTALTTRALENARANGLADKTRFYTRNLFEVTRDDLVEL
GKFDRMLVDPPRDGAVALALALAELRLSHPDLLPSRIVYVSCSPSTLARDAGILTHRAGY
RMTKAGVANMFPHTSHVESIGVFELIPDFQPRAFEAVGQGQEALETQG
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaaaccttcatcgacatcaaatccctcgacatggacgcgcgcggcgtcggccac
ctgcagaacgaggacggcacccaaggcaaggtgatcttcgtcgagggcgcgctgccgggc
gagcgcgtcagcttcgagacgctgcgcaagaagaagaactgggaatcgggccgcatggtc
acgctgcagcgcgcctcggcgatgcgcgtgacgccgaagtgcccgcacttctggcactgc
ggcggctgctcgatgcagcacctggaggcctcgagccaggtggcgatgaagcagcgcgtg
ctggaagataacctgtggcacatcggcaagaccaaggccgaacacatcatgcgcccgatg
tacggcccgacctgggaataccgcctgcgcgcgcgcctgtcggtgcgctgggtgcccaag
aagggtacggtgctggtcggcttccacgagcgccattcctcgtacgtggccgacatgacc
agttgcgagatcatcccgcgccacctgtcgaacatgctggtgccgctgcgcgagctggtg
ggcgcgctgtcgatctaccagcagatgccgcagatcgaggtcgcggtgggcgaggacgtg
accgtgctggtgctgcgcgtcatggcgccgctgtcggcggccgacgaacgattggtgaag
gccttcgccgaccagtggcacatccagtggtggctgcagccgaaggggccggacagcgcg
tatccgtactacccgctgggcaaggaactgtactacacgctgccggaattcggcatcagg
atgccgttcaagccgaccgatttcacccaggtcaaccaccagatcaaccgcctgctggtg
cacaaggcgctgcgcctgctggaggtggcgccgggcgagcgcgtggccgacctgttctgc
gggctgggcaatttcacgctgccgctggcgacccaggcgcgcgaagtggtcggcatcgag
ggcagcaccgcgctgaccacgcgcgcgctggaaaatgcgcgcgccaacggcctggccgac
aagacccgcttttatacccgcaacctgttcgaagtcaccagggacgacctggtcgaactg
ggcaagttcgaccgcatgctggtcgacccgccgcgcgacggcgccgtggcgctggcgctg
gcgctggccgaactgcgcctgagccacccggacctgctgcccagccgcatcgtctacgtc
tcgtgcagtccgtccacgctggcgcgcgacgccggcatcctgacccatcgcgccggctac
cgcatgaccaaggccggcgtggccaacatgttcccgcatacctcgcacgtggagtcgatc
ggggtgttcgagctgatcccggatttccagccgcgcgcgttcgaggcggtggggcagggc
caggaagcgctggaaacgcagggctga
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