Massilia forsythiae: HH212_17765
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Entry
HH212_17765 CDS
T08391
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
mfy
Massilia forsythiae
Brite
KEGG Orthology (KO) [BR:
mfy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mfy03032
]
HH212_17765
03400 DNA repair and recombination proteins [BR:
mfy03400
]
HH212_17765
Enzymes [BR:
mfy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HH212_17765
DNA replication proteins [BR:
mfy03032
]
Prokaryotic type
DNA Topoisomerases
HH212_17765
DNA repair and recombination proteins [BR:
mfy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HH212_17765
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
TPR_HPS5
Motif
Other DBs
NCBI-ProteinID:
QJE01647
UniProt:
A0A7Z2ZV27
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All DBs
Position
complement(4173969..4175111)
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AA seq
380 aa
AA seq
DB search
MKNDERSAADKESNAIPNADPSTAAKAAGLRYVHDDRPGIGRKAVKDGFRYLDAKGNTVD
DEATLARIKALVIPPAWTEVWICPQANGHLQATGRDARGRKQYRYHAKWRSTRDEVKYER
MINFGKALPQIRKDVDRALKLPGLPREKVLATIVYLLEATMMRIGNDEYARENKSYGLTT
LRNRHVKIDGSEVEFSFRGKSGVHHDVKVHDKRLARIIQRTRDLPGQDLFQYLDEDGERH
TVDSGDVNDYLRDITGEDYTAKDFRTWSGTVLAALALQEFEKFDSEAQAKKNVVRAIESV
SEKLGNTPSVCRKCYVHPAVLDAYLDGTMIEGLRARAEQKLVQELHELEPEEAAVLTMLQ
LRLAQDAPKDAGLQVKRRAA
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgaagaacgacgaacgatccgccgcagacaaagagagcaacgccatcccgaacgccgac
ccgtccaccgccgccaaggcggccgggctgcgctacgtccacgacgaccgccccggcatc
ggccgcaaggccgtcaaggacgggttccgctacctggacgccaagggcaacacggtcgac
gacgaggccacgctggcgcgcatcaaggcgctggtgatcccgccggcctggaccgaggtg
tggatctgcccgcaggccaacggccacctgcaggccaccgggcgcgacgcgcgcgggcgc
aagcagtaccgctatcacgccaagtggcgcagcacgcgcgacgaggtgaaatacgagcgc
atgatcaacttcggcaaggcgctgccgcagatccgcaaggacgtcgaccgcgccctgaaa
ttgcccggcctgccgcgcgagaaggtgctggccaccatcgtctacctgctggaagcgacc
atgatgcgcatcgggaacgacgagtacgcgcgcgaaaacaaatcgtatggcctgaccacg
ctgcgcaaccgccacgtcaagatcgacggcagcgaggtcgagttcagcttccgcggcaag
agcggcgtgcaccacgacgtcaaggtgcacgacaagcgcctggcgcgcatcatccagcgc
acgcgcgacctgccggggcaggacctgttccagtacctggacgaggatggcgagcgccac
acggtcgattccggcgacgtcaacgactacctgcgcgacatcaccggcgaagactatacc
gccaaggatttccgcacctggtccggcacggtgctggccgcgctggcgctgcaggaattc
gagaagttcgactccgaggcgcaggccaagaagaacgtggtgcgcgccatcgaatcggtg
tcggaaaagctcggcaacacgccgtcggtctgccgcaagtgctacgtgcacccggccgtg
ctggacgcctacctggacggcaccatgatcgaaggcctgcgcgcgcgcgccgagcaaaag
ctggtgcaggaactgcacgagctggaacccgaggaggcggcggtgctgaccatgctgcag
ctgcgcctggcgcaggacgcacccaaggacgccggcctgcaggtcaagcggcgcgccgcc
tga
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