Methanosarcina flavescens: AOB57_000710
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Entry
AOB57_000710 CDS
T05666
Name
(GenBank) exosome complex protein Rrp42
KO
K12589
exosome complex component RRP42
Organism
mfz
Methanosarcina flavescens
Pathway
mfz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AOB57_000710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfz03019
]
AOB57_000710
Messenger RNA biogenesis [BR:
mfz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
AOB57_000710
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
AOB57_000710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
AYK13927
UniProt:
A0A660HNS3
LinkDB
All DBs
Position
complement(176382..177182)
Genome browser
AA seq
266 aa
AA seq
DB search
MKTMSEIIATLKKDYIYNLMIKGKRQDGRRFKDFRDIKLETNVISKAEGSAKVTLGNTQV
LVGVKLQTGTPFPDSQDEGVIITNLELNPIASPEFEPGPPREEAIEMARVVDRGIRESGA
IDIKKLCITVGESVWIVFIDVHVLNDDGNLIDASCLAAIAALMTTTVPNEQQGIGPNVPL
AMKELPVGVTLAKIGSKLMVDPSLDEEAVCETKLTVVSGSDGAIAGMQKMGSAPLTEAEV
LEAIEVAREKAAELRELYLEGLIRQE
NT seq
801 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaactatgagtgaaattattgccacacttaagaaggactacatttacaaccttatg
attaagggaaaacgccaggacgggcgcaggtttaaagatttcagggatatcaagctcgag
acgaatgttatctcaaaagctgagggttcggcaaaagtgacattgggaaatacccaggtg
cttgtaggggtcaagcttcagacaggaactccttttccggattctcaggacgaaggcgtg
attattaccaacctggaactcaatcctattgcttcccccgagtttgagccgggtccacct
agagaagaagcaatcgaaatggcaagggttgtagacaggggaatccgggaatcaggcgca
attgatataaagaagctttgcataaccgttggagaatccgtctggatcgtctttatagat
gtccacgtcctcaatgacgatggaaatctcattgatgcatcctgtctcgctgctattgcg
gctcttatgaccactactgtcccaaacgagcagcagggaatcgggccgaatgtgcccctt
gcgatgaaagaacttccagtgggcgtgactcttgccaagataggctcaaagctcatggtg
gacccttctctggatgaggaagccgtttgtgagacaaaactgactgttgtctcaggttcg
gatggagccattgcaggcatgcagaaaatgggctctgctcctttaaccgaggctgaggtg
ctggaagcaatcgaggtagcgcgcgaaaaggcagccgaactcagggaactttacctggag
ggcctgataagacaggaatga
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