Methanosarcina flavescens: AOB57_000715
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Entry
AOB57_000715 CDS
T05666
Name
(GenBank) exosome complex exonuclease Rrp41
KO
K11600
exosome complex component RRP41
Organism
mfz
Methanosarcina flavescens
Pathway
mfz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AOB57_000715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfz03019
]
AOB57_000715
Messenger RNA biogenesis [BR:
mfz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
AOB57_000715
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
AOB57_000715
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
AYK13928
UniProt:
A0A660HNS5
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All DBs
Position
complement(177166..178635)
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AA seq
489 aa
AA seq
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MSDKPEKLITDDGLRLDGRRADEIRPMKIEIGVLSRADGSCYLEWGKNKILVGVFGPREA
HPRRSQRSDTAVIRYRYNMASFSVEDRARPGPSRRSIEISKVSREAFEPVIMTELFPKTA
IDIFVEVLQADAGTRTAAINASSIALADAGIPMKGLITSCAFGKVDGQIVLDLNKEEDNY
GEADFPVAMTQDGDITLLQMDGHLTPEEIRKGLELVKKGCKEILEIQRTVLRKKFETPIV
EPEEETEEAEIEAVEAEPSLEYAPEAAAVEEIIEEAEEFEEELSEETVEACAVEEEAPEC
EKLEEIIKEAEAEVIEAEAIEEVIETEIEEEAEDKAFEDEAKFKAALEASYEEVSESLET
GKLCPEETVSEKTEFEPETEEFAEEEAEIEEKPENEEEAEIEKEVEIEEEAEIEEKPEIE
EKPEIEEEAGIEKAVSEETFESEPEIEPETESREKAVEAEEVPVEEECKGPWKVVKDPSE
SGSRGENYE
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgagtgataaacctgaaaaattaatcactgacgatgggctgcgccttgatgggaggcgt
gcggatgagatcaggcccatgaaaattgagatcggcgtactctctagagccgacggttca
tgttatcttgaatgggggaaaaataaaattctcgtaggtgtattcggcccgagagaagct
cacccccgccgttcacagcgttcagatactgcagttatccgttacagatataatatggct
tctttttccgtggaagaccgtgcaagacccggaccaagcagacggagcattgaaatctca
aaagtttccagggaagcttttgaaccggtaattatgacagagctcttcccgaagactgca
attgatatttttgtggaggtgcttcaggctgatgcgggaacaaggacagcagcaatcaat
gcctcaagcatagctcttgccgatgcaggcattcccatgaagggcctgataacttcctgt
gcttttggaaaagttgacgggcagatagtacttgaccttaacaaggaagaggataattat
ggtgaggcggattttcctgttgcaatgacccaggatggagatattaccctgctccagatg
gacggacatctcactcccgaagaaatcaggaaaggtcttgaacttgtaaagaagggctgc
aaagaaattcttgaaatccagcggacagtcctgagaaagaagtttgaaactcctatcgta
gagcctgaagaagaaacagaagaggctgaaattgaagccgtggaagctgaaccttctctt
gaatacgctccggaagcagcggctgtagaagaaattattgaggaagccgaggagtttgag
gaagagctttccgaggaaacggttgaagcctgtgctgttgaggaagaagctcccgagtgc
gaaaaactcgaagagatcattaaagaggctgaggccgaagtaatagaagcggaagctata
gaagaagtaattgaaacagaaatcgaagaagaagctgaagataaagcttttgaagatgaa
gctaagtttaaagctgctcttgaggcttcttatgaggaagtttccgaatctctggagacc
ggaaaactttgtcccgaagaaactgtttctgaaaaaacagaattcgagcctgagaccgag
gaatttgctgaagaagaagctgagattgaggaaaaacctgagaatgaggaagaagctgag
attgagaaagaagttgagattgaagaagaagctgagattgaggaaaaacctgagattgaa
gaaaaacctgagattgaggaagaagccgggattgaaaaggctgtttcagaagaaactttt
gaatccgaaccagagatcgagcctgaaaccgaatccagggaaaaagcagtagaagccgaa
gaagtgcccgtagaagaggagtgcaaagggccctggaaggtagtgaaggacccctctgaa
tctggaagcagaggtgaaaactatgagtga
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