Methanosarcina flavescens: AOB57_000720
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Entry
AOB57_000720 CDS
T05666
Name
(GenBank) S1 RNA-binding domain-containing protein
KO
K03679
exosome complex component RRP4
Organism
mfz
Methanosarcina flavescens
Pathway
mfz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AOB57_000720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfz03019
]
AOB57_000720
Messenger RNA biogenesis [BR:
mfz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
AOB57_000720
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
AOB57_000720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
KH_6
ECR1_N
KH_1
RRP4_S1
S1
RRP40_S1
KH_2
Motif
Other DBs
NCBI-ProteinID:
AYK13929
UniProt:
A0A660HP87
LinkDB
All DBs
Position
complement(178711..179493)
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AA seq
260 aa
AA seq
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MDKKIVIPGDLLSENSKKAGYGTYVKNDKIYSLFCGIENLKEDKVGVIPLAGAYIPSVND
VVIGVVIAVTPSNWIMDIASPYDGLFHVSEYPRRIQSQEMSEVLDVGDSIILRVKDVDSS
MKVELALRDSNFHKLKTGHIVEIEPVKVPRVIGHGGSMISMLKKETNCSIFVGQNGRIWI
DGKDDDVELLSRALRKIEAEAQRSGLTDRVYNFLKNERSKQKESKPAKFFKSGKEEVKLP
KEDHSEEIYRKIDVLLDPKN
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atggataaaaaaatagtgatccctggtgacctgctatccgaaaattctaaaaaagccgga
tacgggacttatgtcaagaacgacaagatctattctttgttttgcggtattgaaaatctc
aaagaggataaagttggagtgatccctcttgcgggagcctatatcccttccgtgaatgat
gtggtgatcggggtcgttattgcggttacgccatccaactggataatggatattgcttct
ccttatgacggcctgttccatgtatccgagtatcctagaagaatacaatcccaagaaatg
tccgaagttctggacgtaggcgactctataattctcagagtaaaagatgtagacagttct
atgaaagtcgagcttgccctccgggattcaaacttccataaacttaaaacaggccatatt
gtcgaaattgagcctgtaaaagtcccacgtgtgatcggacatggcggttccatgatctca
atgctgaagaaagagacaaactgcagcatttttgttggacagaacggtagaatatggatc
gatggaaaggacgacgatgtggagcttttaagcagggctctcaggaagattgaagccgaa
gcccagcgttccggattgacagatcgggtctataacttcttgaaaaatgaaaggagcaaa
cagaaagaatctaaacccgctaagttttttaaaagcggaaaggaagaggtaaagctgcct
aaagaagatcattccgaagaaatttacaggaagatcgatgtgttgctggatccaaagaac
tga
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