Methanosarcina flavescens: AOB57_003985
Help
Entry
AOB57_003985 CDS
T05666
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mfz
Methanosarcina flavescens
Pathway
mfz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AOB57_003985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfz03019
]
AOB57_003985
03009 Ribosome biogenesis [BR:
mfz03009
]
AOB57_003985
Enzymes [BR:
mfz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AOB57_003985
Messenger RNA biogenesis [BR:
mfz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AOB57_003985
Ribosome biogenesis [BR:
mfz03009
]
Prokaryotic type
rRNA helicases
AOB57_003985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
ERCC3_RAD25_C
P-loop_SecA
Cas3-like_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AYK14460
UniProt:
A0A660HQB8
LinkDB
All DBs
Position
905125..906810
Genome browser
AA seq
561 aa
AA seq
DB search
MEKLAKFKALGLSDSMLKALKKKGFEEPTPIQEKVIPLFLKGNCDIIGQAQTGTGKTTAF
GAPIIEKIPEKSGYVQAIVLTPTRELAIQVSEELNSLKGDKKLHIFPIYGGQSMTQQLRM
LKSGVDIVVGTPGRVIDHLERKSLNLEHIKYFVLDEADEMLNMGFIDEIKEILKATGPEK
RMLFFSATMPKPILGIVKKYMRDYEHVAIEKEELVANLTEQIYFEVHENDKFEALCRIID
IEDEFYGLVFCRTKTDTAQLAQKLGDRGYAADALNGDISQNEREKILNRFRKQKINILVA
TDVAARGIDIMDLTHVINYSLPQDPESYVHRIGRTGRAGKQGTAITFVTSTEYRRLTYIK
KTSKSEMRRGRIPEIKDVIKAKRARVKAEIEDTIKAEEYGDCLEMSEKLLDEYPAEKILA
ALLKCAFKEKFDESMYAEISGSSYVDRKGKTRLFIAMGKAEGMTNPNRLCEFIKEETGEN
DLKIRDVEIFPHFSFVTLPFTQAETLLEIFKNKKRGRKPFVEIAQKSKRRNSRNAGDTHN
STRSNTSYTRDRTTKRRYASY
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaattagcaaaatttaaggcacttggactttctgacagtatgttaaaagccctt
aaaaagaaaggatttgaagaaccaaccccaattcaggaaaaagttatcccgctttttttg
aaaggaaattgtgatattatagggcaggctcagaccggaaccggcaaaacaacggctttc
ggagcccccattatagaaaaaatccctgaaaaatcaggttatgtacaggcaatagtcctg
actccaacccgagaactggcaatccaggtttcagaagaactaaactccctgaaaggagac
aaaaagctgcatatcttcccgatatatggaggacagtccatgacccagcaactcaggatg
ctaaaaagtggagttgatatcgttgtgggaactcctggaagggttatagaccaccttgag
cggaagagcctgaaccttgagcacattaaatatttcgtattggacgaagccgacgagatg
ctcaatatgggctttattgacgagattaaagagatcttaaaggcaaccgggcctgagaag
cgcatgcttttcttctcagctacaatgccgaaaccgatccttggcatcgtcaaaaaatac
atgcgggattatgagcatgtcgccattgaaaaagaagaacttgttgcaaacctgaccgag
cagatctactttgaggttcatgaaaatgacaaattcgaagctctgtgcaggattattgat
atcgaggacgaattctatgggcttgtgttctgcaggacaaaaaccgataccgcccaactt
gcccagaaacttggagacagaggatacgcagccgatgccctgaacggcgatatttcccag
aatgaaagggaaaagatccttaaccggttcagaaaacagaaaataaatattctcgtagca
actgacgttgcagctcggggaatcgatattatggatctaacccatgttatcaactattct
ctgccccaagaccctgaatcctatgtgcacagaataggaaggacaggcagggcaggcaag
cagggaactgcaattactttcgttacatctacggagtacaggcgactaacctacataaaa
aagacctcaaagtccgaaatgaggaggggccgaatccccgagataaaagatgtaataaaa
gccaaaagggcaagagtaaaagccgagatcgaagatactataaaagcagaggaatatggc
gactgccttgagatgagcgaaaagctcctggatgaatatcccgccgaaaaaattctggct
gccctcctgaagtgtgctttcaaggaaaagttcgatgaaagtatgtatgcggagatttct
ggaagctcctatgttgaccggaaaggtaaaacaaggctttttattgccatgggtaaagcc
gaaggcatgacgaaccctaacaggctgtgtgagtttataaaagaagagactggagaaaat
gatctgaaaataagagatgtcgaaattttcccgcatttctccttcgtaacattacccttc
acccaagccgaaaccctgctcgaaatcttcaaaaataaaaagagaggcagaaaacccttt
gtggaaattgctcagaagtcgaagagaagaaattccaggaatgctggtgacactcacaat
agcactcgaagcaatacaagctatacgagagatagaactacgaagaggagatacgcttct
tattaa
DBGET
integrated database retrieval system
