Methanosarcina flavescens: AOB57_005345
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Entry
AOB57_005345 CDS
T05666
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mfz
Methanosarcina flavescens
Pathway
mfz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AOB57_005345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfz03019
]
AOB57_005345
Messenger RNA biogenesis [BR:
mfz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AOB57_005345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
DUF4126
Motif
Other DBs
NCBI-ProteinID:
AYK14688
UniProt:
A0A660HQZ7
LinkDB
All DBs
Position
complement(1190486..1191829)
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AA seq
447 aa
AA seq
DB search
MTEIGIVAVGGYNEMGRNMTAVIIGEDIVILDMGLRLDRVQIHEDVEIDKMHSLELIEMG
AIPDDTIMKEISGTVRAIVCTHGHLDHIGAIPKLAHRYNAPIISTPYTAALIKQQIEAER
KFEVCNRVIPLNAGGTYQVTEDIAVEFINVQHSIIDCVLAVVHTPAGAILYACDFKLDRT
PTMGEAPDFERLKALGKGGVIAMIVESTNAGRSGKTPSEQIAKDMVRDVLLGTEESEVGM
IITTFASHIPRLKAIIEAAGEMGRIPVLMGRSMERYVGAARDLGYLELPSNVEMYGQRKD
VDRAFKRIIQEGKNKYLPIVTGHQGEPGSILVRVANGETPYTIEPGDRVIFSANVIPSPM
TQANRYALETKLKMRGARIYDNVHVSGHAYREDHWELLRMINPEHVIPAHGDMEMHGHYI
EMAEDAGYVLGDTVHLLRNGEVLYIEE
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaataggaattgttgcagtcggcggttacaatgaaatgggccgtaacatgact
gcagttattataggtgaagacattgtcattctggacatggggctcaggctcgatagggtt
cagatccatgaagatgtcgaaattgacaaaatgcattctctcgaacttatcgagatgggg
gcaattcctgatgataccattatgaaagaaattagtggaactgtccgggcaattgtctgt
actcacgggcaccttgatcacataggggcaatcccgaaacttgcccacaggtataacgcc
ccaattatctccacgccatatacagcagcccttatcaaacaacagatcgaggctgagcgc
aagtttgaggtttgcaacagggttattcctttgaatgcaggagggacttaccaggttacg
gaagatattgccgtcgaattcattaacgttcagcacagcatcattgactgtgtacttgca
gtggttcatactccagctggagcaatcctgtacgcttgcgactttaagctggataggact
ccgacaatgggtgaagctccggatttcgagcgcctcaaagccctcggaaagggaggggtt
atcgcaatgattgtcgagagcacgaacgccgggcgctcaggaaagactccttccgaacag
attgcaaaagatatggtaagggatgtgttgctcggaactgaagagtccgaagtcgggatg
atcattacaacctttgcctcccacatacccaggctaaaagcaattattgaggcagccgga
gaaatgggcaggattcctgtacttatgggccgttcaatggaacgctatgtgggggctgcg
agagatctgggttatctggaattaccttccaatgtcgagatgtacgggcagcgtaaagat
gtcgaccgggctttcaaacgtattatccaggaaggaaagaacaagtaccttccaatcgtc
accggacaccagggcgagccaggctccatacttgtacgtgttgcgaacggggaaacccct
tatacaattgaaccgggagacagggttattttctctgcaaatgtaatcccgagtcccatg
actcaggctaaccgctatgctcttgaaaccaagctcaagatgcggggcgccaggatctat
gacaatgttcacgtctcaggacatgcatacagagaagaccactgggagcttctgcgcatg
ataaatcctgaacatgtaatccctgctcatggggatatggaaatgcacgggcactacatc
gagatggcggaagatgccgggtatgtactcggagatacagtacaccttctcaggaacggt
gaagtgttatatatagaagaataa
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