KEGG   Methanosarcina flavescens: AOB57_006000
Entry
AOB57_006000      CDS       T05666                                 
Name
(GenBank) RNA-binding protein
  KO
K07573  exosome complex component CSL4
Organism
mfz  Methanosarcina flavescens
Pathway
mfz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mfz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AOB57_006000
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mfz03019]
    AOB57_006000
Messenger RNA biogenesis [BR:mfz03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     AOB57_006000
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     AOB57_006000
SSDB
Motif
Pfam: ECR1_N EXOSC1 OB_RRP5_4th HypA ALS_ss_C Zn_Tnp_IS91 S1
Other DBs
NCBI-ProteinID: AYK14799
UniProt: A0A660HRP9
LinkDB
Position
1325709..1326620
AA seq 303 aa
MIRIRKSKTTRKKLTGPSAGKSVAEKASQVAPESRDQFKGQSRDQFKSQPREQPREQSRD
QFKGQPRSQPREQSKDHFRGDQSKKRRFPYPKKAPRGRTEAPESRTPCEPATPEEELEKG
DFVLPGELIGTIEEFKPGEGTTVSVGDIYSLATGNVVIDRKARIVSVRPSTLTPNILKVG
DVIYGKIIDVRESGAMVEIAGIEGKEDREIVNVRTGDIHVSNVRDSYVKRFSDEFRPSDI
IRARVIDAERMRLTTAEDSLGVVKAYCSNCRGELVLEGKKLKCPACNMTETRKISTEYGK
GIK
NT seq 912 nt   +upstreamnt  +downstreamnt
atgattagaatccgaaaaagtaaaactacgagaaagaaattgactggcccgagcgcagga
aagtcagttgctgaaaaagcatctcaagtcgctccagaaagcagggaccaattcaaaggc
cagtccagagatcagtttaaaagtcagcccagggaacaacccagagagcagtccagagac
cagttcaaaggtcaaccgaggagccagcccagggaacagtctaaagaccatttcagggga
gaccagagtaaaaagagaaggttcccctacccgaaaaaagctcccaggggaaggacggaa
gcacctgagtctagaaccccctgtgaacccgcgacccctgaagaggagcttgaaaaagga
gattttgttctccctggagagctcattggaaccatagaagagtttaaacccggtgaagga
acaacggtatctgtcggtgatatttactccttagctaccggaaatgttgttattgacagg
aaagcgagaatagtttcggtcaggcccagtacacttactccgaatatccttaaagtgggg
gatgttatttatggaaagataattgacgtgcgtgagtccggagcaatggtagaaattgca
ggaattgaaggcaaagaggatcgggaaatcgtcaatgtgcggactggagacattcacgtc
tcaaatgtacgtgactcctatgttaagagattttcagatgaattcagaccctctgatata
atccgcgccagggtcatcgacgctgaaaggatgcgcttgacaacagctgaagattctctc
ggagttgtaaaagcctactgctcaaattgcagaggggaacttgtgcttgaagggaaaaag
cttaaatgcccggcttgcaatatgactgaaacccgcaaaatctcaaccgagtacgggaaa
gggatcaagtaa

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