Mycolicibacterium gadium: MGAD_28510
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Entry
MGAD_28510 CDS
T07053
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mgad
Mycolicibacterium gadium
Pathway
mgad03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mgad00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MGAD_28510 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mgad03021
]
MGAD_28510 (rpoC)
03400 DNA repair and recombination proteins [BR:
mgad03400
]
MGAD_28510 (rpoC)
Enzymes [BR:
mgad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MGAD_28510 (rpoC)
Transcription machinery [BR:
mgad03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MGAD_28510 (rpoC)
DNA repair and recombination proteins [BR:
mgad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MGAD_28510 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
Motif
Other DBs
NCBI-ProteinID:
BBZ18516
UniProt:
A0A7I7WLI7
LinkDB
All DBs
Position
complement(2888961..2892911)
Genome browser
AA seq
1316 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRNWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITAVDDEMRHNELSTLEAEMVVEKKAVEDQRDADLEARAQKLEAD
MKELEDEGAKSDVKRKVRDGGEREMRQLRDRAQRELDRLDEIWTTFTKLAPKQLIVDEVL
YRELIDRYGEYFTGAMGAEAIKKLIETFDIDAEAEELREVIRSGKGQKKLRALKRLKVVA
AFQSNSNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIGEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYFLTTMIEGDTGEYV
AAAKDKPESGVYSSPAEAIMAMDRGSLSVRANIRVRLTQLRPPADIEAELFEDGWKPGDA
WTADTTLGRVLFNELLPTAYPFVNEQMHKKVQARIVNDLAERYPMIVVAQTVDKLKDAGF
YWATRSGVTVSMADVLVPPQKQEILERHEHEADRIEKQYQRGALNHDERNEALVKIWQDA
TEEVGKALEAYYPEDNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSFR
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCETERGVNITL
AEMQDKTLVRDQHIETSAYARTLATDAVDAKGNVIVERGHDLGDPAIEALLAAGVTEVKV
RSVLTCATGTGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVSG
GSDIVGGLPRVQELFEARIPRDKAPIADVTGRVQLEEGERFYKITIIPDDGGEEVVYDKL
SRRQRLKVFKHDDGTERLLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVKEVQE
VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERGEFETENRRVVAEGGEP
AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLQGLKENVIIGKLIPA
GTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
gtgctagacgtcaacttcttcgatgaactccgcatcggtcttgccaccgcggacgacatc
cgcaactggtccttcggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
ccagagaaggacgggctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtcactcgcgccaaggtgcgccgtgagcggatgggccacatcgagctggccgcgccc
gtcacgcacatctggtacttcaagggtgtgccgagccggctgggctacctgctcgacctg
gcgccgaaggatctcgagaagatcatctacttcgcggcctacgtgatcacggcggtcgac
gacgagatgcggcacaacgagctgtccacgctcgaggccgagatggtcgtcgagaagaag
gccgtcgaggatcagcgcgacgccgacctggaggcccgggcccagaagctcgaagccgac
atgaaggagctcgaggacgagggcgccaagtccgacgtcaagcgcaaggttcgtgacggt
ggcgagcgcgagatgcgtcagctccgcgaccgggcccagcgtgagctggaccggctcgac
gagatctggaccaccttcaccaagctggctcccaagcagctcatcgtcgacgaggtgctc
tatcgcgagctcatcgatcgctacggcgagtacttcaccggcgccatgggcgcggaggcg
atcaagaagctcatcgagaccttcgacatcgacgccgaggccgaggagctgcgcgaggtc
atccgtagtggcaagggccagaagaagcttcgcgcgctgaagcgtctcaaggtcgtcgcg
gcgttccagtccaacagcaactcgccgttgggcatggtgctcgacgcggttccggtgatc
ccgccggagctgcgccccatggtgcagctcgacggtggccgcttcgccacgtcggacctc
aacgacctgtaccgccgcgtcatcaaccgcaacaaccggttgaagcgactcatcgacctc
ggtgcccccgagatcatcgtcaacaacgagaagcgcatgcttcaggagtcggtggacgcg
ctgttcgacaacggccgccgcggccgtccggtcaccgggccgggcaaccgtccgctcaaa
tcgctgtccgatctgctcaagggcaagcagggccggttccgtcagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtggtgggcccgcagctgaagctgcatcag
tgtggtctgccgaagctgatggcactcgagctgttcaagccgttcgtgatgaagcgtctc
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcgcatggtcgagcgtcagcgt
ccccaggtgtgggatgtcctcgaagaggtcatcggtgagcacccggtgctgctgaaccgc
gcaccgacgctgcaccgcctcggcatccaggcttttgagccgcagctggtggagggcaag
gcaattcagctgcacccgctggtgtgtgaggcgttcaacgccgacttcgacggtgaccag
atggccgtgcaccttccgctgtccgcggaggcgcaggccgaggcgcgcatcctgatgctg
tcgtcgaacaacatcctgtcgccggcgtcgggccgccccctggccatgccgcgtctggac
atggtgacgggtctgtacttcctgaccaccatgatcgagggtgacaccggcgagtacgtg
gccgccgccaaggacaagccggagtcgggtgtgtacagctcacccgccgaggcgatcatg
gcgatggaccgcggttcgctgagcgttcgcgccaacatccgcgtgcggctgacccagctg
cgtccgccggccgacatcgaagccgaactcttcgaggacggttggaagccgggcgacgcc
tggacggccgacaccacgctgggccgggtgctgttcaacgagttgctcccgactgcgtat
ccgttcgtcaacgagcagatgcacaagaaggtgcaggcgcggatcgtcaacgatctggcc
gagcgctacccgatgatcgtcgtcgcgcagacggtggacaagctcaaggacgccggcttc
tactgggccacccgttcgggtgtcaccgtctcgatggccgacgtgctggtgccgccgcag
aagcaggagatcctggagcgtcacgagcacgaggccgaccggatcgagaagcagtaccag
cgcggcgcgctcaaccacgacgagcgcaacgaagcgttggtcaagatctggcaggacgcc
accgaagaggtcggtaaggctctggaggcctactaccccgaggacaatccgatcatcacg
atcgtgaagtccggcgccacgggcaacctgacccagacccgcacgcttgcgggcatgaag
ggtctggtgaccaacccgaagggtgagttcatcccgcggccgatcaagtcctccttccgt
gagggcctgacggtgctggagtacttcatcaacacccacggtgcccgaaagggtctggcg
gacaccgctcttcgtaccgccgactcgggttacctgacccgtcgtcttgtcgacgtgtcg
caggacgtcatcgttcgcgagacggactgcgagaccgagcgtggcgtcaacatcacgctg
gccgagatgcaggacaagacgctggttcgcgatcagcacatcgagacgtccgcctacgcg
cggacgctggccaccgacgccgtcgacgccaagggcaacgtgatcgtcgagcgcggtcac
gacctgggcgacccggcgatcgaggcgctgctggccgcgggtgtcaccgaggtgaaggtc
cgctccgtgctgacctgcgcgacgggcaccggcgtgtgtgcgatgtgctacggccgctcg
atggcgacgggcaagctggtcgacatcggcgaggcggtcggcatcgtggccgcgcagtcc
atcggtgagcccggcacgcagctgaccatgcgtacgttccaccagggcggcgtctccggc
ggcagcgacatcgtcggtggtctgcctcgtgtccaggagctgttcgaggcccgcatcccg
cgtgacaaggcgccgatcgccgacgtcaccgggcgcgtgcaactcgaggagggcgagcgc
ttctacaagatcaccatcatcccggatgacggtggcgaggaagtggtgtacgacaagctg
tctcgtcgtcagcggctaaaggtcttcaagcacgacgacggcaccgagcggttgctgtcc
gacggcgaccacgtcgaggtgggccagcagctgatggaaggctccgctgacccgcacgag
gtgcttcgagtccagggcccccgcgaggtgcagatccacctcgtcaaggaggtccaggag
gtctaccgcgctcagggcgtgtcgatccacgacaagcacatcgaggtcatcgtccggcag
atgctgcgtcgcgtcacgatcatcgattcgggtgcgacggagttcctgcccggctcgctg
accgagcgtggcgagttcgagaccgagaaccgtcgggtcgtcgccgagggcggcgagccc
gcggcgggtcgtccggtgctgatgggtatcacgaaggcatcgctggccacggattcgtgg
ctgtcggcggcgtcgttccaggagaccacacgcgtgctcaccgatgcggcgatcaactgc
cgcagcgacaagctgcagggtctgaaggagaacgtgatcatcggcaagctgatcccggcc
ggcaccggcatcaaccggtaccgcaacatccaggtgcagccgaccgaggaagctcgggcc
gccgcgtacacgatcccgtcctacgaggatcagtactacagcccggacttcggtcaggcg
accggtgccgcagtgccgttggacgactacggctacagcgactaccggtaa
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