Mycolicibacterium gadium: MGAD_43850
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Entry
MGAD_43850 CDS
T07053
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mgad
Mycolicibacterium gadium
Brite
KEGG Orthology (KO) [BR:
mgad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mgad03019
]
MGAD_43850 (hrpA)
Enzymes [BR:
mgad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MGAD_43850 (hrpA)
Messenger RNA biogenesis [BR:
mgad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MGAD_43850 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
NACHT
T2SSE
AAA_25
PhoH
AAA_23
Motif
Other DBs
NCBI-ProteinID:
BBZ20050
UniProt:
A0A7I7WSD7
LinkDB
All DBs
Position
4417617..4421537
Genome browser
AA seq
1306 aa
AA seq
DB search
MSELSAAELRQRLDGLTIRDAARLGRRLKNLRGAGPDKLRPIADQIAAGEGLIATRLAAV
PAIAYPDLPVSARRDEIAKAIIDHQVVIVAGETGSGKTTQLPKICLELGRGIRGTMGHTQ
PRRLAARTVGQRIADELGTPLGEAVGYTVRFTDQASDRTLLKLMTDGILLAEIQRDRRLL
RYDTLILDEAHERSLNIDFLLGYLRELLPRRPDLKVIVTSATIEPERFAAHFGGAEHGPS
GGAPIVEVSGRTYPVEIRYRPLEVAVAADESDDPDDPDHEVVRTELRDQTEAIVDAVDEL
SAEPPGDVLVFLSGEREIRDTAEALRHLKNTEVLPLYARLPTAEQQRVFQPSQSARRIVL
ATNVAETSLTVPGIRYVVDPGTARISRYSRRTKVQRLPIEPISQASAAQRAGRSGRTAPG
VCIRLYSEEDFESRPRYTDPEILRTNLAAVILQMAALNLGDIETFPFLDPPDRRSIRDGV
ALLQELGAFDANGAITDIGRRLAQLPVDPRLGRMILQAEEEGCVREILVLAAALSIPDPR
ERPADREEAARQKHARFADENSDFISYLNLWRYLGEQRKELSGNALRRMCREEFLHYLRI
REWQDLTGQLRSIARDLGIRESDDHEPADPARLHAALLAGLLSHVGLREGESRDFQGARN
VKFVLAPGSVLTKRPPRWIVVADLVETSRLYGRIAARIQPETVERIAGDLVQRTYSEPHW
DAQRGAVMAYERVTLFGLPLVPRRRVGYATVEPEVARELFIRRALVEGDWQTRHHFFRDN
ARLRAELTELEDKARRRDLLVGDDEVFAFYDARVPANSVSAKHFDAWWKKQRHKTPDLLT
LTRDDLLRKDDAAVEGPDTWQADELSLPLTYRFEPGAEDDGVTVHVPVEVLARLDGDEFS
WQVPALREELITALIKSLPKDLRRNFVPAPDTARAVLASIAPDGEPILQALQRELHRLTR
VLVPIDAFDLDKLPPHLRVTFAVESDGKEVARGKDLEALQTQLAAPIRRAVAEAVAGELE
RTGLRTWPDDLDELPRTVERASGAHAVRGFPALVDTGGAVDIRVFPTEAEQAAAMVPGIR
RLLRLDAPSPVKSLERELDPRARLVLGANPDGSLTALLDDCADAATDRLAPVPVWTRADF
AALRGRVAEQLLPTTRAILGQVERVLAAAHDVDLALPATPPPTQADAIADIRDQLARLMP
KGFVTATGATRLTDLTRYLTAINRRLERLPHAVGADRERMQRVHDVQDALDDLIGALSPT
RAGADDIRDIALQIEELRVSLWAQQLGTPRPVSEKRIYRAIDAVTP
NT seq
3921 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagctgtcagccgctgagctccgccagcgcctcgacggcctgacgatccgcgac
gcggcacgccttggcaggcgtctcaagaaccttcgcggcgccgggcccgacaaactgcgg
ccgatcgccgaccagatcgccgcgggcgaaggcctgatcgcgactcggctggccgcggtg
ccggcgatcgcctatcccgaccttccggtcagcgcgcgccgcgacgagatcgccaaggcg
atcatcgaccaccaggtcgtcatcgtcgccggggagacgggctcggggaagacgacgcag
ctgccgaagatctgcctcgaactcggccgcggtatccgcggcacgatgggccacacgcaa
ccacgccgcctcgccgcacgcacggtcggacagcgcatcgccgacgagttgggcacgccg
ctgggtgaggccgtcggctacaccgtgcggttcaccgaccaggccagtgaccgcaccctg
ctgaagctgatgaccgacggcatcctgcttgccgagatccagcgcgaccgccgactgctg
cggtacgacacgctcatcctcgacgaggcgcacgagcgcagcctcaacatcgactttctg
ctcggctatctgcgtgagctcctgccgcgacggcccgacctcaaggtgatcgtcacctcc
gcgacgatcgagcccgagcgcttcgcggcgcacttcggcggagccgaacatgggcccagc
ggcggagcaccgattgtcgaggtgtcggggcggacgtatccggtcgagatccggtaccgg
ccactggaagtcgccgtggcggccgatgagtccgacgaccctgacgatcccgaccacgaa
gtggtgcgtaccgagttgcgcgaccagaccgaggccatcgtcgacgccgtcgacgaactg
tctgccgaaccgccgggtgacgtcctggtgttcctgtcgggtgagcgcgagatccgcgac
accgcagaggctctacgtcacctgaagaacaccgaggtgctgcctttgtatgcgcgcctg
cccaccgccgaacagcagcgggtctttcagcccagtcagagcgcgcggcgaatcgtgttg
gccaccaacgtcgccgagacctcgctgacggtgcccggcatccgctacgtcgtcgacccc
ggcaccgcccggatctcgcggtacagccgaaggaccaaggtgcagcggttgccgatcgag
ccgatctcgcaggcgtcggccgcccagcgcgccggccggtctggccgcaccgcacccggt
gtgtgcattcgcctctactccgaggaagatttcgagtcgcgtccgcgctacacggatccg
gagattctgcggaccaacctggccgcagtcattctgcagatggcggcgctgaatctcggt
gatatcgagacgtttccgtttctggacccgcccgaccggcgcagcatccgcgacggcgtc
gccctgctgcaggaactcggcgccttcgatgccaatggcgccatcaccgatatcggccgt
cgcctggcgcagctgcccgtcgacccgcgcctggggcgaatgatcctgcaggccgaggag
gaaggctgtgtgcgcgagattctcgtgctcgccgcggcgctgtcgatccccgatccgcgt
gagcggccggccgaccgcgaagaggcggcacgtcagaagcacgccaggttcgccgatgag
aactccgatttcatctcctatctgaacctgtggcgctatctcggtgagcaacgaaaggaa
ctttcgggcaacgcgcttcgacggatgtgccgcgaagagttcctgcactacctgcgcatc
cgcgagtggcaggacctgaccgggcagctgcgcagcatcgcccgcgacctcggcatcagg
gagtccgacgatcacgagcccgccgatcccgcgcggctgcacgcggcgctgctggccggt
ctgctgtcgcatgtcggattgcgcgagggcgagtctcgtgattttcagggtgcacgcaac
gtcaagttcgtcctggctcccggttcggtgctgaccaagcgtccgccacggtggatcgtc
gtcgccgacctcgtcgagaccagtcggctgtatggccgaatcgccgcacggatccagccg
gagacggtcgagcgaatcgcaggcgatctcgtccagcgcacctacagtgagccgcactgg
gacgcacagcgcggcgccgtgatggcctacgagcgggtgacgctcttcggactgccgctg
gtgccacggcggcgggtcggctacgcgacggtggagcctgaggtcgcccgtgaactgttc
atccgccgtgccctcgtcgagggcgattggcagacacgccatcacttcttccgcgacaac
gcgcggctgcgcgcggaactgaccgaactcgaggacaaggcgcgcaggcgcgacctgctg
gtcggcgacgacgaggtctttgcgttctacgacgcgcgtgtacccgcgaactccgtgtcg
gcgaagcacttcgacgcgtggtggaaaaagcagcggcacaagacacccgacctgctcacg
ctgacccgcgacgacctgctgcgcaaggacgacgcggccgtcgaggggccggatacctgg
caggccgacgagctgtcgctgccgctgacctaccgcttcgaaccgggcgccgaggacgac
ggtgtgacggtgcacgtacccgtcgaggtgctggcccgcctcgacggtgacgaattcagc
tggcaggtaccggcgttgcgcgaggagctgatcaccgctctgatcaagtcactgccaaag
gacctgcgccgcaactttgttcccgcaccggacaccgcgcgcgccgtgctcgcctcgatc
gcgccggacggcgaaccgatactgcaggccctccagcgtgaactgcaccggctgacccga
gtgctcgtgccgatcgacgcgttcgacctcgacaagctgccgccccacctgcgggtcacc
ttcgccgtcgagtccgacggcaaggaggtcgcgcgcggcaaggacctcgaggccctgcag
acccagctggccgcgccgattcgtcgtgccgtcgccgaagcggttgcaggagagctggaa
cggaccggcctgcggacgtggcccgacgatctcgacgagctaccccgcaccgtcgaacgc
gccagcggcgcgcacgccgtgcgtggcttccccgcactggtcgacacgggaggcgcggtc
gacatccgcgttttcccgaccgaggccgagcaggcggcggcgatggtgcctggcatccga
aggctgctgcgactggatgcaccctcgccagtgaagagccttgagcgcgaactggatccg
cgcgcccggctggtgctgggcgcgaaccccgacggatcgctcacggcgctgctcgacgac
tgcgccgacgcggcgaccgaccggctggcgccagtacccgtgtggacccgcgccgacttc
gccgcgctgcgcggccgcgtcgccgaacaactgctacccacgacgcgggcgatcctcggc
caggtcgagagggtgctcgccgcggcccacgacgtcgacctcgcgctgcccgccacgccg
ccgccgacgcaggccgacgcgatcgccgacattcgcgaccagctcgccaggctcatgccg
aaaggcttcgtcaccgccaccggggccacgcggctcaccgacctcacccgctatctgacc
gccatcaaccggcgactcgagcggctgccgcacgccgtcggtgcggaccgcgaacggatg
cagcgcgtgcacgatgtccaggacgccctcgacgacctgatcggggcgctgtcgccgacc
cgcgcgggcgccgacgacatccgcgacatcgccctgcagatcgaggagctgcgggtcagc
ctgtgggcacagcagctcggcaccccccggccggtcagcgagaagcggatctaccgggcg
atcgacgccgtcacaccgtga
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