Rasiella rasia: G5B37_05525
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Entry
G5B37_05525 CDS
T06461
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mgel
Rasiella rasia
Pathway
mgel03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mgel00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
G5B37_05525 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mgel03021
]
G5B37_05525 (rpoC)
03400 DNA repair and recombination proteins [BR:
mgel03400
]
G5B37_05525 (rpoC)
Enzymes [BR:
mgel01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
G5B37_05525 (rpoC)
Transcription machinery [BR:
mgel03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
G5B37_05525 (rpoC)
DNA repair and recombination proteins [BR:
mgel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
G5B37_05525 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QIE59042
UniProt:
A0A6G6GKF9
LinkDB
All DBs
Position
complement(1237892..1242193)
Genome browser
AA seq
1433 aa
AA seq
DB search
MARNNNEQQQKKFNKISIGLASPESILAESRGEVLKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKI
GYLLGLPSKKLDMIIYYERYVVIQPGIAKNEEGEPVQKMDFLTEEEYLTILDSLPQENLY
LDDSDPNKFLAKMGAECLIELLQRIDLDTLSFELRHKANNETSKQRKTEALKRLQVVEAL
RDANKNRENNPEWMIMKVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLM
EIKAPEVILRNEKRMLQESVDSLFDNTRKSSAVKTDSNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPELKLYECGIPKDMAAELYKPFVIRKLIERGIVKTVKSAKKIIDK
KEPVVWDILENVLKGHPVMLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTVFNADFDG
DQMAVHLPLGPEAILECQLLMLASHNILNPANGSPVAVPSQDMVLGLYYMTKLRKSTPEM
KVVGEGLTFYSAEEAIIAYNEKQVDLNAEIKIRTKDFNEEGELVYQIITTTLGRVIFNQQ
VPEEAGYINEVLTKKSLRDIIGDILAVTSVPVTAAFLDEIKSLGYKFAFEGGLSFSLGDI
IIPPEKQQMIDDANTQVDGIVGNYNMGLITNNERYNQVIDIWTATNAELTELSMKRIRED
QQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSNSGGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIINTEDCGTLRGIEVSALKKNE
EVVEKLGARVVGRTSLNDVVNPLTKEVLVHAGDHITEAIAKTIDASPIESVEVRSALTCE
AKKGICSQCYGRNLATNKMVQRGEAVGVVAAQSIGEPGTQLTLRTFHVGGIAGNISEENK
LTVKFDGKAEIEDLKTVKGEDGDGKTVDIVISRTSELKLVDEKTGITLSTNVIPYGSTIF
VKDGEKLKKDDVVCQWDPYNGVIISEFAGKIRYENIEQGVTYSVEIDEQTGFQEKVITES
RDKKKIPTLQIIGKKDEVIRSYNLPVGALLSVDDGDKIKIGKILVKIPRKSAKAGDITGG
LPRVTELFEARNPSNPAVVSEIDGVVSFGKIKRGNCEIIVESKLGEIKKYLVKLSNQILV
QENDYVRAGMPLSDGSITPEDILRIKGPSAVQQYLVNEVQEVYRLQGVKINDKHFEVVVR
QMMRKVRIVDPGDTTFLENQLVHKYDFIEENDKIFGMKVVTNAGDSENLKEGQIITSRDL
RDENSILRRSDKTLAEARDAVNATATPILQGITRASLQTKSFISAASFQETTKVLNEAAV
SGKVDTLEGLKENVIVGHRIPAGTGMRRYDTIIVGSKEEFEEMTQEKQEVNYN
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atggcaagaaataataacgaacaacaacaaaagaaatttaataaaatttctattggttta
gcatcaccagaatctatattggctgagtctcgtggagaagtgctaaaaccagaaactatt
aactaccgaacgcacaagccagagcgtgacggtttgttctgtgagcgaatttttggtcct
gtaaaggattacgaatgtgcttgtggaaaatacaagcgtatccgttataaagggattgtt
tgtgaccgttgtggggtagaggtaaccgaaaagaaagtacgtcgtgatcgcgtaggacac
attaatttagttgttcctgttgcacacatttggtatttccgtagtttaccaaacaaaatt
ggataccttcttggattgccatctaagaagttagatatgattatatactacgaaagatac
gtagttatacaaccaggtattgcaaagaatgaagaaggagagcctgttcagaaaatggac
ttccttactgaagaagaatacctaacaattttagacagccttccgcaagaaaatttatac
ttggatgatagcgatccaaataagtttcttgcaaaaatgggagcagagtgtttaattgaa
ttgttacaacgtatcgatctagataccttgtcttttgaattacgtcacaaggcaaacaac
gaaacttctaagcaacgtaagacagaagctctaaaacgtcttcaggttgtagaagcatta
cgcgatgctaataaaaaccgtgaaaacaatccagagtggatgattatgaaagtggtgcct
gtaattccaccagaattacgcccgttagtaccattagatggaggtcgttttgcaacgtca
gatttaaatgatttataccgtcgtgtaattatacgtaacaaccgtctaaaacgcttaatg
gaaattaaagcgccagaggttattttacgaaatgaaaagcgtatgttgcaagaatctgta
gattcattgttcgacaatacacgtaaatcttcagcagtaaaaacagacagtaaccgcccg
ctgaaatccctttcagattccttaaaaggaaagcaaggacgtttccgccagaacctatta
ggtaaacgtgtagattatagtgcgcgttctgtaattgttgtaggacctgaattaaaatta
tacgagtgcggtatccctaaagatatggcagcagaactttacaagccttttgtaattaga
aaactaattgaaagaggaattgtaaaaaccgttaaatctgcaaagaaaattatagataag
aaagagcctgttgtttgggatatacttgaaaatgtattgaaaggacaccctgttatgctt
aaccgggcccctaccttacacagacttggaattcaagcattccaacctaagttaatcgaa
ggaaaagcaatccaactgcacccattagtatgtacggtatttaacgccgattttgatggt
gaccagatggcggtacaccttccacttgggccagaggcaattttagagtgtcaattattg
atgctagcatctcacaatattttgaaccctgcaaatggtagcccagtagcggtaccatct
caggatatggtattgggtctatattatatgaccaaattgagaaagtctaccccagagatg
aaggttgttggagaaggattaacattttactctgccgaagaagcaattattgcttacaat
gaaaagcaagtagacttaaatgctgaaataaaaattagaacaaaagattttaacgaagaa
ggtgagttggtataccaaattattaccactacacttggtcgtgtaatctttaaccagcag
gttcctgaagaggcaggttacataaatgaagtattaactaagaagtcattacgtgatatt
attggtgatattttagctgtaacaagtgttccagtaacagctgcatttttagatgaaatt
aaaagtcttggttataaatttgccttcgaaggtggattgtcatttagcttaggggatatt
attatccctccagaaaagcaacaaatgattgacgatgcaaatacacaggtagatggtatt
gtaggaaactataatatgggtcttattacgaacaacgaacgttataaccaagtaattgat
atttggactgcaacaaacgctgagctgactgaactatcaatgaagcgtattcgtgaagac
caacaagggtttaactcggtgtatatgatgcttgattctggagcacgtggatctaaagaa
cagattcgtcagcttacaggaatgcgtggtttgatggcaaaaccgaaaaaatcgaatagt
ggtggaggtgaaattattgaaaacccgattctttctaactttaaagaaggactttcaatt
cttgaatactttatttctacgcacggtgcacgtaagggacttgcagataccgcattaaaa
acggcagatgcaggatacttaacacgtcgtttggtagatgtttctcaggatgtgattatt
aatacagaagattgtggtacacttagaggtattgaagtttctgcattgaagaagaacgaa
gaagtagtcgagaaattaggtgctcgtgtggtaggacgtacgtcgttaaacgatgttgtt
aatccacttacaaaagaagtactagttcacgctggagatcatattacggaggcaattgcc
aaaacaatagatgcttcaccaattgagtctgtagaagttcgttctgctttaacatgtgaa
gctaagaaaggaatttgttctcaatgttacgggcgtaaccttgctaccaataaaatggta
caacgaggagaagctgtaggtgttgtagcggctcagtctattggtgaaccaggaacacag
ttaacattgcgtaccttccacgtgggtggtattgcaggtaacatttccgaagaaaataag
cttaccgttaaatttgatggtaaagctgaaatcgaagacttgaaaactgttaaaggtgaa
gatggagatggaaaaactgtagatattgtaatctcgcgtacttcggaattaaaattagta
gacgagaaaacgggtattacattaagtacaaatgttattccttacggttcaaccattttt
gtaaaagacggcgagaaactgaagaaagacgatgtagtttgtcaatgggatccatataat
ggtgttattatttcagaatttgcaggtaaaatcagatacgagaatatcgagcaaggagtt
acctattctgtagaaattgatgaacaaaccggattccaagaaaaggtaattacagaatct
agagacaagaaaaaaataccaacactacaaattattggtaagaaagacgaagtaattcgt
tcgtacaaccttcctgtaggggcattgttgtctgtagatgatggtgataagattaaaata
ggtaagatcttagttaagattccgcgtaaatctgctaaagcaggtgatattacgggaggt
cttccgcgtgtaaccgaattatttgaagcacgtaacccttctaatcctgctgtagtaagt
gagattgacggtgttgtttccttcggaaaaattaagcgtggtaactgtgagattattgta
gagtctaagcttggtgaaatcaagaaatatttggtgaagctaagtaatcagattttggta
caggagaacgattatgttcgtgctggtatgccattgtctgatggttctataactccagaa
gacatcttacgtattaaaggcccatctgcggtacaacaatacttagtgaatgaagttcag
gaagtataccgtttacagggtgtgaaaattaacgataagcactttgaggttgttgtaaga
caaatgatgcgtaaagtacgaattgttgatccaggagatacaacattcctagagaaccaa
ttggtacacaagtacgactttattgaggaaaacgataaaattttcggaatgaaagtggtt
acaaacgctggagattcagaaaatcttaaagaaggtcagataattacatctcgtgattta
cgtgatgaaaattcaatcttgcgtcgttcagataaaaccttggcagaagctcgtgatgcg
gtaaatgctactgctacaccaattcttcaaggaattacaagagcgtcgttacagaccaag
tcgttcatttctgcggcatcgttccaggaaactactaaggtattaaacgaagctgctgta
agtggtaaagttgatacattagaaggactgaaagagaatgtaattgtaggacatagaatc
cctgccggtacaggtatgagacgttatgatactattattgtaggttctaaagaagagttc
gaagaaatgactcaagagaaacaagaggtgaattacaattaa
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