Megalopta genalis: 117223638
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Entry
117223638 CDS
T07400
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
mgen
Megalopta genalis
Pathway
mgen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mgen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117223638
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mgen03019
]
117223638
Messenger RNA biogenesis [BR:
mgen03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117223638
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117223638
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
NOT1_connector
CNOT1_CAF1_bind
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
HTH_upst_double_PIN
Motif
Other DBs
NCBI-GeneID:
117223638
NCBI-ProteinID:
XP_033331911
LinkDB
All DBs
Position
Unknown
AA seq
2402 aa
AA seq
DB search
MNLDSLSFTLSQISYLVANLNKKNFRDSCQEISDLVLWKGLEADRHLLRSLLSCIDFSTG
ETPESTAKDYFQVQLLKQECTNLLSKPSFISNLCFAIDHPFHQQKTLNPSPKFFLRLKKV
LGLTLVQEVAFAIALLHSENSEICALALEHVQKQLPELIKNYINSETSNKHHEEGLHDSL
PEVLHLILSQALYTANQFGLSSEAKEKFLKNLRRDFPRELVPVVLAPLLYPDNGETPQAK
IELNMAVNQMDGNSLVELIMELGYGFTSSVEECRSALAGLGAREISPACAARVLGHMART
CSNLDDAGGLQSYWGNSGATQDANKEKSADNVPPITWNVEVFIQALKEIQSTLSWNEVIV
KLDHAEFVIKDRQGLNLLITGLRLGLQHQGYLPDIFPVELFYRHWDNVEGQFSLVQQILK
CPDIFCFADYPYHSVTVDVLKAAPESDSKEAQTWRSLNVVELLLHMAERGLYVSVQEIFK
WPIQHCPDVLVLALLQINAPITILRQELLSTLMPIFLGNHPNSAVILHHAWHGNAVKIKS
IIMHAMAEWYIRGDHDQTRLSRILDVAQDLKALSHLLTAQSYPFVIDLACLASRREYLKL
EKWLTDKIREQGEVFVTACVKFLQRRCPQVMGPGIKEDITVPKASQLPQETLTTMLACLQ
VCAGGVSQECSEAIMTMVQNCNLMLSKSTMSRPPPPGVLRHRALESFNPASLGGPLFSSK
QVDPLGNLSSSLASMNLGSSLGPPSSSAFNLPGAIGPLVSAPGSPSRLMGPSPSSFPILP
VSSQLHPGPVGTQGPSVLPGSTTIGSLGRLGPPTGIEKARIPETSNLFPDMAQNVSKEIE
DEANSYFQRIYNHPPHPTLSIDEVLDMLKKFQDSGSKREREVFNCMLRNLFEEYRFFPQY
PDKELQITAQLFGGIIERGLVNSYVTLGLALRFVLDALRKPEGSKMYYFGITALDRFKSR
LKDYQTYCEHVRTIQHFSEFPQHLIEYIEYGLQGQEPPTRPQGPVLPKTLAAMLAPVTTP
YKTITTTTITTSTTQTKSSTTPTASLSARPSIANATNIDTLLVATDKEEKITSPPEALQD
KTAFIFNNLSQLNMQQKCDEIREIVTEEYWPWMAQYLVMKRASVELGFHALYSNFLECLK
LPEVYKLVTRETFRNIKVLLRSDKGIANFSDRTLLKNLGHWLGMLTLGRNKPILQIDIDV
KGLLVEAYHKGNQELLYVVPFVAKVLESCAKSRVFRPPNPWTMAIMNVLAELHQEPDLKL
NLKFEIEVLCKNLNIDVVVRISELKPALYLKDPEKLRNLESQLSHPNKKSEANNNPQQTQ
GPIEELVGPTPTGTIVPQPAPANTTPSLPTGPPEPRFNYMDISVNMANIAQHITINNQLP
LFQTHPHLKQFVRPAVERAIQEWIHPVVDRSIKIALTTSEQIVRKDFALDADEVRMRTAA
RHMVRNLTAGMAMITCRDQVLASISTNLKQAFLTSMMGTTPQQKELAEQAANVVAADNME
LACAFVQKTAIEKAIPEMDKRLLNEIELRKIARQEGRRYCDPLAKYQAERMPEQIRLKVG
GVTPQQMAVYEEFARNIPGFLPLSERDTQALMMPKPVTETAVTAFAANPAVAVTAQQVAA
YAAAVSNDEVGAMLEKLAADVEVLLAAMGPAAPPPQHAALHSLLESIILTRRSRDAGAAM
ALLKKAVEGLLDGPTSGVTDSEFILRYRELHLRILKCLQDPRAYGMQWTNKHVTRCLTEC
REEFRYNFEAVDYLIRSHLISLPQYDLALAQAMDSGNAMATAFAMQLVQLYLIDERQTTH
VTESDLFHTIEILARMAHHRAPPEGILLFRLTNLIESLRVNHDPGVLADRAPAGPTAHIH
SGILQVRARDFDDPPGLMEKTEYLLREWVSMHHNPTHARDPTKAFGMFVHQMNMHGILKT
DDLITRFFKLSTQMCVDLCYRALAETNAAPSVVRAKCFHSLDAFVRLVALLVKHSGDSTN
THTKINLLNKVLGIVAGVLLQDHEIRGTDFQQLPYHRIFIMLFLELCAPEPVLEAVNYQV
LTAFCHTLHILRPAKASGFCYAWLELVSHRVFIGRMLAVTPQQKCWGMYAQLLIDLFKYL
APFLRNAELAKPVTLLYNGTLRVILVLLHDFPEFLCDYHYGFCDVIPPNCIQMRNLILSA
FPRNMRLPDPFTPNLKVDMLPEIAHAPRVLTNFASMIQPLSFKKELDSYLKARAPVTFLS
ELRSNLQVSQEAGVRYNSQLMNALVLYVGTQAIAFIRSKGHTPNMSTIAHSAHMDIFQNL
AVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTLLYLFAEANTEAIQEQITRVLLERLIV
NRPHPWGLLITFIELIKNPTYKFWAHEFVHCAPEMEKLFDSVAKSCMVQQLQSTPEPEIP
KS
NT seq
7209 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggactcgttgtcttttactttgtcacaaatcagttatttggttgcgaattta
aataagaaaaattttcgggacagctgccaagaaatatcagatttggtgctgtggaagggt
ctggaggcagacagacacttgctgcgctctttgctctcgtgcatcgatttttcaacagga
gaaacaccggaatcaacagcgaaagattattttcaagtgcaacttctgaagcaagagtgt
actaatcttcttagcaaaccttcttttatttctaatctgtgctttgctatagatcatcca
tttcaccagcaaaagactttgaacccatcgccaaagttttttttacgtttgaaaaaggta
cttggcttaactctggtacaagaagttgcatttgcgattgcattgctgcattctgagaat
tctgaaatttgtgcattagccctagagcacgtgcaaaaacagctgcctgaattgattaaa
aattatatcaactctgagacgagcaataagcatcacgaggaaggattacacgattcgtta
cccgaagttcttcaccttatattgtctcaagctttatacacagccaatcaatttggcctt
tcatcagaggcaaaggaaaaatttctcaagaatttaaggcgcgattttccccgtgagctg
gtaccagtggtgctagcaccactcttgtatccagacaacggggaaactccgcaagccaaa
attgaattaaacatggctgtcaatcaaatggatggaaattctctagtagaattgattatg
gaattaggatatggatttactagcagtgttgaagagtgtagatcagccttagctggccta
ggtgctcgagaaatatctccagcatgtgctgcacgagttctaggtcatatggcacgtact
tgtagtaatcttgatgacgctggaggtttacaatcatattggggtaattcaggagcgacg
caagacgctaataaagaaaagtctgcagataatgtccctcctatcacttggaatgttgaa
gtgtttattcaagctttaaaagaaattcaatctacactatcatggaatgaagtgatagtt
aaattagaccatgctgaatttgtgattaaagataggcagggattgaatttactaatcact
ggcttaagattgggattacaacatcaaggatacctacctgatatatttcctgtagaactt
ttttatcgtcattgggataacgtagaaggacaattttctttagtacaacaaattctgaaa
tgtccagacatattttgttttgctgactatccttatcactctgtaaccgtggatgtgttg
aaagctgcaccagaaagtgatagtaaggaagcacaaacatggaggtctttgaatgttgtt
gaattactcttacatatggcagaaagagggctttatgtctcagttcaagaaatatttaaa
tggccgattcaacactgccccgatgttcttgtattggcgttattacaaattaatgcacct
attactatattgagacaagaattacttagcacgttaatgcctatttttctcggaaatcat
ccgaattctgctgtcattttgcatcacgcgtggcacggaaatgctgttaaaattaaatcc
attataatgcatgccatggcggaatggtatatacgtggagatcacgatcaaactcggcta
tctcgcatcctggacgttgctcaagacctgaaagcgttgagtcacttacttactgctcag
tcgtacccttttgttatcgatttggcttgtttggcttcaaggagagaatacttaaaatta
gaaaaatggctaacagacaaaatcagagaacagggcgaagttttcgttaccgcttgtgta
aagtttttacaaaggcgttgcccgcaagtgatgggacctggcataaaagaggatatcaca
gttccaaaagcaagtcaacttccacaagaaacattaacgaccatgcttgcttgtttgcaa
gtgtgcgctgggggtgtttctcaagagtgttcggaagcaataatgactatggtacaaaac
tgtaatctcatgttaagtaaaagtacaatgagtagacctccgccaccaggagttttaaga
catcgagcattagaatctttcaatccagcttcgttgggaggaccgctattctcttctaag
caagtagacccacttggaaatttaagttcgagtcttgcatctatgaatttgggatctagt
cttggtcctccaagcagttccgcgttcaatttacctggtgctatcggacctttggtgtct
gcacctggctctccttcacgtcttatgggaccttctccaagttcatttccaatcttgcca
gtatcttctcaattgcatccagggccagttggaacacaagggccgtctgtccttcctggt
agtacaacaattggaagtctgggtcgccttgggccgccaacaggcattgaaaaggcaaga
atacctgaaacatcgaacttatttcctgacatggcacaaaatgtttccaaagaaatcgag
gacgaagcgaatagctattttcaacgtatatacaaccatccgccacaccctactttatca
attgacgaagttctagatatgttgaaaaaatttcaagattctggtagtaagagagaaaga
gaagtgttcaattgtatgctacgaaacttgttcgaggaataccgcttttttcctcaatat
cctgataaggaattacaaatcacagcacaattatttggtggaatcattgaaagaggatta
gttaatagctatgtgacgcttggattggctctgagatttgtattggatgctcttcgcaaa
ccagaaggcagcaagatgtattattttggcataactgctctggatcgtttcaagagccgt
ttaaaagattaccaaacatattgtgagcacgtcaggacaattcagcatttcagtgagttc
ccacaacatttaattgagtacatagaatatggattacaggggcaggagcctcccaccaga
cctcaaggtccggttctcccaaaaaccctagcagctatgttagcacctgttactacacca
tataaaactattacaacaacaaccataacaaccagtactacccaaacaaaatcgtctaca
acgccgaccgcatccctttcagctagaccttccattgctaatgcaacaaatatcgataca
ttattggtggccacagataaagaagaaaagataacatcaccacctgaagctttacaagat
aagacagctttcattttcaacaatcttagccaactaaatatgcagcaaaaatgtgatgaa
attcgggaaattgtcacggaagaatattggccttggatggctcagtatctagtaatgaaa
cgagctagcgtagaattagggtttcatgctttatattccaattttttggaatgtctaaaa
ttacctgaggtgtataaactggttactagggagacgtttagaaacataaaggttttatta
cgaagtgataaaggaatagcaaatttttctgaccgaacacttctaaaaaatttaggtcat
tggttaggaatgttaactcttggcagaaataaacctattttacagattgatatagacgta
aaaggtttacttgttgaagcatatcataaaggcaatcaagaactcctttatgtggttccc
tttgttgctaaagtacttgaaagttgtgcgaagagtcgtgtttttcgtccacctaatccg
tggacaatggcaatcatgaatgtgctagcagaactgcatcaagaacctgatttgaaatta
aacttgaaatttgaaattgaagtgctttgcaagaatctaaacattgatgtcgttgtaaga
atatcagaattaaagcctgcactttatttgaaggatccagaaaagttgcgaaatttagag
tcgcaattgtcgcatccaaataaaaaatctgaggcaaataacaatccacaacagacgcaa
gggcctattgaagaattagttggtccaactccaactggaacaattgttccgcaacctgct
cctgcgaatacgacaccgtctttacctactggtccaccagaaccacgctttaattatatg
gatatatctgtaaacatggctaatatagctcagcatattaccattaataatcagctacca
ttgtttcaaacacatccgcatttaaagcaatttgttcgcccagctgttgagagagcaatt
caagaatggattcatcccgttgttgaccgctcaattaaaatagctctgactaccagcgaa
caaattgtaagaaaagattttgcattagatgcagatgaggttcgaatgagaacagcggct
agacacatggtccgtaatttaaccgccggaatggctatgattacttgtcgtgaccaggtg
ttagcgtcaattagtacaaacttaaagcaagctttcctcacttcgatgatgggcacaact
ccgcaacagaaggagcttgcagaacaagcagccaatgtagtggctgctgacaatatggaa
cttgcctgtgcatttgtacaaaaaaccgccattgagaaggctattccagaaatggataag
cgtttgctgaatgaaattgaattgcgaaagattgcgcgtcaagagggacgacgatactgt
gatccattagctaaataccaagctgaaagaatgcctgaacaaattaggttgaaagtagga
ggagttacccctcagcaaatggctgtgtatgaagaatttgcgagaaatattcctgggttt
ttgccactttccgaacgtgatactcaagctctaatgatgccaaaacctgttaccgaaact
gctgtaactgcattcgctgctaatcccgcggttgcggtaacagcacaacaggttgctgca
tatgcggcagcagtaagtaacgatgaggtgggagcaatgttagaaaaacttgcagccgat
gttgaagtattacttgctgcaatgggtccagctgcaccacctccacagcatgccgcgctt
catagtctactagaatctattatcttaacgcgaaggtcaagggatgcaggcgctgcaatg
gcattactcaagaaggctgtggaaggattgttggatggtcccacgagcggtgtgacagat
tccgaatttatattacgatatagggagctacacttacgtattttaaagtgtcttcaagat
ccgcgtgcttacggcatgcagtggacaaacaagcatgttactcgttgtttaacagaatgc
agggaagaatttcgatataactttgaagctgtcgattacctcataagatctcatctaatt
agtcttccacaatacgacttggccctagctcaggctatggattctggaaatgcaatggca
acagcattcgcgatgcagctagtgcaactttatttaattgatgaaagacaaactacgcac
gttaccgaatccgacttattccacacaattgagatactggctaggatggcccatcacaga
gcaccaccagaaggaattttattattcagactgaccaatttaatagaatcgttgcgcgtt
aatcacgatccaggtgtattagctgatagagcaccagctggacctaccgctcatatacat
tcgggaattcttcaggtgagagcacgcgatttcgacgatcctcccggattaatggaaaag
acggagtatttgctccgtgaatgggtatcgatgcatcataacccgacacacgcgcgtgat
cccacgaaagctttcgggatgttcgttcatcaaatgaacatgcacggaattttaaaaacc
gacgatctcataacaagatttttcaagttgagcacacagatgtgcgtcgatctgtgttat
cgtgctctggccgagactaacgcagctccatccgtcgttcgtgcaaagtgtttccattcg
ttggacgcgttcgtccgtttggtcgcacttttggtgaaacattctggcgatagtacaaat
actcatacgaagatcaatcttctgaataaggttttgggaattgttgctggcgtattgctg
caggatcacgagatacgcggaactgattttcaacagctgccttatcacagaatattcatt
atgctcttcttagagctgtgcgcgcccgaaccagtattggaagcagtgaattaccaagta
ttgactgctttctgtcatactctgcatatacttagaccggccaaagcttcaggattttgt
tacgcttggctagagctagtttcgcacagagtttttattggacgtatgctcgcggttaca
ccgcaacagaaatgttggggaatgtacgctcagcttttgatcgatttgttcaaatactta
gcgcctttcctccgaaacgccgaacttgcaaaaccagtcactctgttgtataacggaact
cttcgagtgatattggtgttgttacacgatttcccggaattcctttgtgactatcactac
ggattctgcgacgtaattcctcccaactgtatacaaatgagaaatctgattttaagcgca
tttccaaggaatatgcgcttacccgatccattcacgccgaacctgaaggtcgacatgcta
ccagagatagcacatgctccacgagtattaaccaactttgcgtccatgatacaaccgctt
agtttcaagaaggagctagattcatacttaaaggcacgtgccccggtcactttcctttcc
gagctacgcagtaatttacaagtatctcaagaagccggtgttcgttacaatagtcaatta
atgaacgccctagtactttacgttggtacacaagctatagctttcattcgcagtaaaggg
catacaccgaatatgtctactatcgcacattctgcacatatggatatattccaaaacttg
gcagtcgatctcgatacggaaggacgttacttgtttttaaacgcgatcgcaaatcaacta
cggtatcccaacagtcatacgcattatttcagttgcacacttctgtacttgtttgctgaa
gctaacaccgaagcgatacaagaacaaattacaagagtcctcctggaaagacttatcgtg
aacagaccacatccctggggtttgctgatcaccttcatcgaacttatcaagaatcctaca
tacaagttctgggcgcacgagtttgttcattgcgcaccagaaatggaaaaactgttcgat
tcagttgctaaatcgtgtatggttcaacaattacaatccactccggaaccggagatccca
aagtcatag
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integrated database retrieval system
