Megalopta genalis: 117229100
Help
Entry
117229100 CDS
T07400
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
mgen
Megalopta genalis
Pathway
mgen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mgen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117229100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mgen03019
]
117229100
03041 Spliceosome [BR:
mgen03041
]
117229100
03009 Ribosome biogenesis [BR:
mgen03009
]
117229100
03016 Transfer RNA biogenesis [BR:
mgen03016
]
117229100
Enzymes [BR:
mgen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117229100
Messenger RNA biogenesis [BR:
mgen03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
117229100
Spliceosome [BR:
mgen03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
117229100
Complex C
U4/U6.U5 tri-SnRNP related factors
117229100
Ribosome biogenesis [BR:
mgen03009
]
Eukaryotic type
Pre-60S particles
Helicases
117229100
Transfer RNA biogenesis [BR:
mgen03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
117229100
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
117229100
NCBI-ProteinID:
XP_033341153
LinkDB
All DBs
Position
Unknown
AA seq
1019 aa
AA seq
DB search
MANFTADLFDVFEEADEIVEIPPIKQDNTSTSLAEKKTGDSSGKREFESTENDHVEVKKL
KSDFVLSDINIEELAPRIKIHTIETIESCTHEVAVPPDYEYVPLENKQGKPAKEYKFVLD
PFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIACSLKDKQRVIYTTPIKALSNQKYRE
FFEEFKDVGLITGDVTINPTASVLIMTTEILRNMLYRGSEVMREVGWVIFDEIHYMRDKE
RGVVWEETLILLPDNVHYVFLSATIPNARQFVEWVTHLHKQPCHVVYTDYRPTPLQHYIF
PVGGDGIHLVVDEAGQFKEENFNRAMACLQHGDAAKGDTKGRKGGMRATNAGQTNIFKMV
KMIMERNFAPVIIFSFSKKDCEIYAMQMAKLDLNTLEEKKLVNEVFNNAMDVLNEEDRRL
PQVENVLPLLRRGIGIHHGGLLPILKETVEILFGEGLIKALFATETFAMGLNMPARTVLF
TASRKFDGKDFRWITSGEYIQMSGRAGRRGLDEKGIVILMIDEQVSPVIGKAIVQGKADP
INSAFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNQASIPDLYNKVKELQAAYNAVDID
KYSQISSYHDIREQLDRLTNEFRSYLTKPEYLLPFLQPGRLVKVKNENEMFDWGIIVNFK
KKNPKNPTGRENTVIIIDILLHISKESSEGCPIPCHEGQEGEVEVVPVLHTLISQISSLR
LYYPKDLRPSDNRKSVLKTIQEVKKRFPDGLPLLNPITDMRIEDEAFKDIVKKIELLEER
LYAHPLHKDSNVNTLYEQFLNKEDLGDQLKQAKSELKKAKSILQMDELKCRKRVLRRMDY
CTASDVIQLKGRVACELNGADELLMTEMIFNGLFNSLSVPQMIALISCFVCDEKSNEMPR
STEELSGPLRQMQDLARRIAKVSTEANLELDEDAYVERFKPYLMDVVYSWSKGATFLQIC
KMTDIFEGSIIRCMRRLEEVLRQLCQAAKNIGNTDLENKFSEAIKLIKRDIVFASSLYL
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atggcaaattttacggctgatctattcgatgttttcgaagaagcggatgaaatagtggaa
ataccgccaataaaacaggataacacaagcacctccttggctgaaaaaaaaacaggggat
agtagcggtaaacgagaattcgaatctactgaaaacgatcatgttgaagtaaagaaattg
aaatcggattttgtattaagcgatataaacatagaagaattagctccacgaattaaaata
catactatagaaacgattgagtcctgcacacacgaagttgctgttccaccagattacgaa
tatgtacctttagaaaacaaacaagggaaaccagctaaagaatataaatttgtactagat
ccatttcagaaggaagcaatactgtgtatagaaaacaatcagtctgttttagtttctgcc
cacacatcagctggtaaaactgttgttgcggagtatgctatagcatgttcgttgaaagac
aaacaaagagtaatctatactactcccataaaagcattgagtaaccagaagtatagggag
ttctttgaagagttcaaagatgttggtttgataactggggatgttaccattaatccaaca
gccagtgtcttaattatgaccacagaaatcttaagaaatatgctgtacagaggatcagag
gttatgcgtgaagttggatgggtaatttttgacgaaattcattatatgcgtgacaaagaa
agaggcgttgtatgggaagaaacattaatattattaccggacaatgtgcattacgttttt
ctttctgctactataccaaatgcgcgacaattcgtcgagtgggttacgcatttacataaa
caaccatgccatgttgtttacacagactatagaccaactccgctacaacattatatattc
cctgttgggggtgatggaattcatttggtggtagatgaagctggacaatttaaagaagaa
aacttcaatagagcaatggcgtgtttgcagcatggtgatgcagctaaaggtgacacaaaa
ggccgtaaagggggtatgcgagctacgaatgctgggcaaactaatatttttaaaatggtt
aagatgattatggaaagaaatttcgcgcccgttattatattcagtttttcaaagaaagat
tgcgaaatctacgcgatgcagatggctaaattggatttgaacacattggaagagaaaaaa
ctggtgaacgaggtatttaacaatgctatggatgttctcaacgaggaagatagacgttta
ccacaggtggaaaatgttttgccattattgagacgtggaataggaattcatcacggtgga
ctgttacctatattgaaagaaacagtggagatactattcggcgaaggtctgataaaagcg
cttttcgcgacggagacgtttgcgatgggtttaaacatgccagcgcgaacagtgttgttc
accgcttcacgaaaattcgacggtaaagattttcgttggataacttccggagagtacata
caaatgtctggccgagctggcagaagaggactggatgagaaaggtatagtaatactgatg
atcgatgagcaagttagtcctgttatcggtaaagcgattgtacaaggaaaagcggatccc
atcaattcagcgttccatttaacgtacaacatggttctgaaccttttgagagtcgaagaa
attaatccagaatatatgcttgaaaggagtttttatcagtttcaaaatcaagcttctatc
cccgatttgtacaataaggtaaaagaattacaagcggcatataacgcagtggatattgat
aagtatagtcaaatatcgtcttatcatgacatacgtgaacaacttgatcggcttactaat
gagttccggtcttatttgacaaagccagagtatttgctaccttttttgcaacctggaagg
ctagttaaagtaaagaatgaaaatgagatgttcgattggggtattatagtgaattttaag
aagaaaaatccaaagaatccaacaggaagagagaacacagtcataattattgatatttta
ctgcacatttcgaaagaatccagcgaagggtgccctataccctgccatgaagggcaagag
ggtgaagtggaagtggtacctgtattgcatacattaatttctcaaatcagttctcttagg
ttgtattatccgaaagatttaagaccgtcggacaatagaaaaagtgtattgaaaacaata
caggaagtgaagaaaagattccccgacggattaccactcctgaatcccatcacagacatg
cgtatagaagacgaggcattcaaagatatcgtcaaaaaaatcgaactacttgaagaaaga
ctatacgcacatcctttgcacaaagattccaatgtaaatacattatacgagcaatttttg
aataaagaggatttgggtgatcagttaaagcaagcgaaatcagaactgaagaaagccaaa
tcgatacttcaaatggacgaattaaaatgtagaaaaagagtactgagaagaatggattac
tgtacagcgtccgatgttatacaattaaagggccgtgtggcctgcgaactgaacggagct
gatgaattgttaatgacggagatgatctttaatggattattcaattcattaagtgtgcca
cagatgatagcattaattagttgttttgtttgtgacgaaaagtcgaatgaaatgccaagg
tctacggaggaattaagtggtccgcttcgacaaatgcaagatttagctcgaagaatagcg
aaagtatctacagaagctaatttagagttagatgaagacgcgtacgtggaaaggtttaaa
ccctatctcatggatgtagtatattcttggagtaaaggggctacgtttttacaaatttgt
aaaatgacagatatatttgaaggttcaattatacgatgtatgcggcgattagaggaagtt
cttaggcaattgtgtcaagcggcaaaaaatattggaaatacggacttagagaataaattc
agcgaagcaatcaaacttataaaacgtgatattgtcttcgcctcatctttgtatttataa
DBGET
integrated database retrieval system
