Megalopta genalis: 117230002
Help
Entry
117230002 CDS
T07400
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mgen
Megalopta genalis
Pathway
mgen03013
Nucleocytoplasmic transport
mgen03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mgen00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117230002
03015 mRNA surveillance pathway
117230002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mgen03019
]
117230002
Enzymes [BR:
mgen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117230002
5.6.2.5 RNA 5'-3' helicase
117230002
Messenger RNA biogenesis [BR:
mgen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117230002
mRNA cycle factors
Common to processing body (P body) and stress granule
117230002
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
Helicase_RecD
DEAD
ATPase
NPHP3_N
SRP54
AAA_22
AAA_16
nSTAND3
AAA_10
AAA_7
AAA
AAA_32
AAA_5
Motif
Other DBs
NCBI-GeneID:
117230002
NCBI-ProteinID:
XP_033342900
LinkDB
All DBs
Position
Unknown
AA seq
1123 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDPEEADLIGADTQGSEFDFTDFTLPSPSQTQASQHDVVQSQSSQ
PVQVGFLVNGTSGGSSLDLKISGAAQSLAELQFEEEEEEAYYNRDLPDHACKYCGIHEAS
CVVMCNVCRKWFCNGRGNTSGSHIINHLVRAKHKEVTLHRDGPLGETVLECYSCAVRNVF
VLGFIPAKADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLIEDRSFLAWLVKIPSEQEQL
RARQISAQQINKLEELWRDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKL
EADYDKRLKESQTQENIEVRWDVGLNKKTIAYFMLAKTDGDMKLMHGDELRLRYLGELHK
PWSGIGHVIKIPDNYGEEVGIELKNNSGAPTECISNFVVDFIWKSTSFDRMQLALRKFAV
DDTSVSAYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAVQRPLSLIQG
PPGTGKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVRLCAKSREAI
DSPVSFLALHNQIKNMETNTELQKLQQLKDETGELSSVDEKRYRLLKKAAEKELLEAADV
ICCTCVGAGDPRLHRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMC
KKAARAGLSQSLFERLVVLGIRPFRLEVQYRMHPDLSRFPSNFFYEGSLQNGVCADERKL
LKIDFPWPAPDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKIATRFLRCGVKPEQIGV
ITPYEGQRAYLVQYMQYQGSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGF
LNDPRRLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLNNLKESMIQ
FAKPKKLVNAANPGSHFMSTSMYDAREALIPGSVYDRSGTQVNGTQNHNPYYQRNVPLDI
FSRTHDTISYISPERAQAAMNNVPVPVGMFMNMAHVPPRFYNQHQQALQARQNQRNRRGT
TLSKNKQGPRMGKLSQTEQNTQPYSQPGLPLTQGTTQGMSQPGFSLSQPGLSQAELSQDS
FAVGEFQSQMDGLLSQDSTYQGDRSGFYQSGHSQAGGQFSQPY
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcgacgcgtacggaccaagcagtcaaaccctcacgttcctcgatccggaggaa
gcggatctaatcggagcggacacgcagggcagcgaatttgatttcaccgattttacccta
ccatcgccgagtcagacgcaagcttcacagcacgatgttgttcaaagtcaatccagccag
cctgtacaggttggttttctggttaatggaacgagcggcggatcttccttggacttgaag
atttctggagctgcgcaaagccttgctgaattacagttcgaagaggaggaggaggaagca
tattataatcgtgatttaccagaccatgcttgtaaatactgtggaattcatgaagcatct
tgcgttgttatgtgcaatgtctgccgcaaatggttttgtaatggacgtggtaatacatcc
ggatctcatatcatcaatcatcttgtcagagcaaagcataaggaagttactctgcacagg
gatggccccctgggagaaacagttctggaatgctactcttgcgctgttagaaatgttttt
gttcttgggtttatcccggcaaaggcagactctgttgtcgtccttctgtgtaggcaacca
tgtgcggctcaaagttccttgaaagatatgaattgggatcaggaacagtggaagcctttg
atcgaagatcgtagttttttggcatggctggttaagattccatccgaacaagaacaactt
cgtgcccgacaaatttctgcacagcagatcaacaaattggaagaattatggcgcgataac
gtagacgcgactttccaagatctagagaaacccggtgtggatgaggaaccgcaacaagtg
ctcctacgttacgaggatggttaccaatatcaaaatatattcggtcccctggtgaagcta
gaagcagattatgataaacgcttgaaggaatctcaaacgcaggagaacatcgaagttcga
tgggatgttggtttgaacaaaaagaccatagcatacttcatgcttgccaaaactgacggt
gacatgaaattgatgcatggagatgaattaagacttcgctacttgggcgaactgcacaag
ccatggtcaggtattggacatgtgataaaaattcctgacaattacggtgaggaagttggt
atagaattgaaaaataattctggagcaccaacggaatgcatcagtaattttgttgtcgac
ttcatttggaagagtaccagcttcgaccgaatgcaattagcgttacggaaatttgccgtg
gatgatacttccgtatccgcttacatctatcacagattattgggacacgaggtggaggag
gttctgtttcgttgtcatttgcctaagcacttcagcgcccctaatttacctgacttgaat
cggtctcaggtatatgccgtaaagcatgcagtccagagaccattgtctttaattcaagga
ccacctggcactggcaaaactgtgactagcgcaacgatagtttaccaattggtgaagcag
aatggtggacctgtcttagtgtgtgctccttccaacacagccgtagaccaactgacagag
aaaatacataagtcgaacttaaaagtagtgcgactttgcgcgaaatcgagagaagcaatc
gattcgcccgtaagctttcttgctttgcacaatcagataaagaacatggagacgaacacc
gaattgcagaagttacaacaattgaaggacgaaacaggagagctatccagtgtcgatgag
aaacgttacaggctgctgaagaaagcagctgagaaagaattgttggaagcagccgatgta
atttgttgtacttgtgtgggagcaggtgatccaaggctgcatagattgaaattccattcg
atcctaattgacgagagtatgcaggcaacggagcctgagtgcatggtgccagtcgtgctc
ggagctaagcaattgatccttgttggtgaccattgccaattaggaccagtagtaatgtgc
aaaaaggccgccagagcgggcctgtcgcaatccctgttcgagagactggtcgttcttgga
attagacctttccgtttggaggtgcagtaccgtatgcacccagatctgtcgcgtttccca
tcgaacttcttctatgagggttctctacagaacggtgtatgcgccgatgaaagaaagttg
ctgaagatcgactttccctggcctgcgccagacaaacctatgttcttctatgtcacccag
ggacaagaagagatcgctggtagtggcacttcctacttgaatcgaaccgaagcgtcaaac
gttgaaaaaatagcaacgcgtttcctgcgttgcggcgtgaaacccgagcagatcggtgtt
ataactccttacgaggggcagagagcttatttggtacaatacatgcaatatcagggatcg
ttgcactcaaagctctaccaagagatcgaggttgccagcgtggatgcgttccaaggtcga
gaaaaggacataataatcatgtcttgcgtcagatcgaacgaacaccaaggcattgggttc
ttgaacgatccaagacgtttgaacgttgccttgacacgggccaagtatggaataataatc
gtaggaaacccgaaagtgttatccaagcaaccgctctggaatcatctattgagtttctac
aaggaacagaaggttctcgtggagggaccattgaacaatctgaaggagtccatgatccag
ttcgccaagccaaagaaactagttaacgctgccaatccgggctcacatttcatgtccacg
tccatgtacgacgccagagaagctctgatcccaggatcggtgtacgacaggtcaggcacg
caggtgaacggaacgcagaatcacaatccgtactatcagaggaacgtaccgcttgacata
ttcagtaggactcacgataccatcagttacatcagcccagagagggcacaagctgctatg
aacaacgtgccggttccggtaggcatgtttatgaacatggcacacgtgccaccacgcttc
tacaatcaacaccagcaagcactacaagccagacagaatcaacggaaccgtcgaggaacc
acgttgtccaagaataagcagggaccgcgcatgggtaaactgagtcagacggagcagaat
acccaaccttatagtcagcctggtttgccgttaacccagggtacgactcaaggcatgtct
caaccgggcttcagcctttctcaacctggattgagccaggcagaactttcacaggactcg
ttcgcggttggagaatttcagtcacagatggatggcttgctatcgcaggactcgacttac
caaggtgaccgaagtggtttttatcagtccgggcactcgcaagccgggggacagttctcc
cagccatactga
DBGET
integrated database retrieval system
