Marinobacterium iners: CFI10_03340
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Entry
CFI10_03340 CDS
T07136
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
mgeo
Marinobacterium iners
Pathway
mgeo02020
Two-component system
mgeo02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mgeo00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CFI10_03340
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CFI10_03340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mgeo03021
]
CFI10_03340
Transcription machinery [BR:
mgeo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CFI10_03340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Arg_repressor
HTH_12
Motif
Other DBs
NCBI-ProteinID:
QSR34026
LinkDB
All DBs
Position
complement(687044..688549)
Genome browser
AA seq
501 aa
AA seq
DB search
MKQSLQLKIGQHLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLEVEEELDSAEETQ
TEARDDRHDASADSLSNDTADEDSWDENALEERWNDEIPRELSTDSNWDDTFQHQSTPGP
ARDDDWEPGDNDSAEDSLQDHLLWQLNLTPMSDPDRMVAMALIDAVDPDGYLRTDVDEVL
EHFTRSEPQLFADAEPEEIETVLHRLQQFDPPGVCARDLSECLQIQLRQLPENTPMLKEA
LRLVRDHLGLLGNHDYRTLMRRMRLKEEALQQIISLIQSLNPKPGTSISSEQSEYVIPDV
VVRKVQGQWNVSLNSEASPKLRINTDYADLIRRADNSADNTYLKNHLQEARWFLKSLLSR
NETLLKVATEIVARQIDFFEEGEEGMKPMVLHDIAEAVEMHESTISRVTTQKYMHTPRGI
FELKYFFSSHVSTSDGGAASSTAIRALIKKLISAENTAKPLSDNKIADLLKEQGFNVARR
TVAKYREAMNIPPSNERKRLV
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaatcgttacaactcaagatcggccagcatctgacgatgacaccccagttgcaa
caagcaatacgtctgctgcaactgtcaacgctggacctgcagcaggagatccaggaagcc
ctggagagcaacccactgctggaagtcgaggaggaactggacagcgccgaagagacccag
actgaagcccgtgatgatcgtcacgacgcctctgccgacagcctctctaacgacaccgct
gacgaggacagctgggacgaaaacgcactggaagagcgctggaatgatgaaatccctcgt
gaactgtccaccgacagcaactgggatgataccttccagcaccagagtacacccggtcct
gcccgtgatgatgactgggaacccggtgataacgattcggccgaagacagccttcaggat
cacctactgtggcagctcaacctgacccccatgagtgaccctgaccgtatggtcgccatg
gcccttatcgatgctgtcgatccggatggctatctacgcacggacgtagatgaagttctg
gaacacttcacccggagcgaaccccagctgtttgcagatgccgagcctgaagagattgaa
acggtactgcaccgcctgcaacagtttgacccgcccggtgtctgtgcacgagacctgagc
gaatgtctgcagatacagctgcgccagctgcctgaaaatactccgatgctgaaagaggca
ttacgcctggtacgcgatcacctgggtctgctcggcaatcatgactatcgtaccttgatg
cgccgcatgcgcctgaaggaagaggccctgcaacagatcatcagtctgatccagtcgctt
aatccaaaaccgggcaccagcatcagcagtgaacagtcagagtacgttatacccgatgtt
gtggtgcgcaaggtgcaggggcagtggaatgtaagcctgaactcagaggcatcccccaag
ctgcgtatcaataccgactatgctgatcttataagacgggccgacaacagcgctgacaac
acctatctgaaaaaccatctacaggaagcgcgctggtttctgaagagcctgctgagtcgc
aacgaaaccctgctcaaggtcgccaccgagatcgtggcccgccagatcgattttttcgag
gaaggtgaagagggtatgaagccgatggttctgcatgacatcgctgaagccgtagagatg
cacgaatcaaccatttcccgtgtcactacccagaaatacatgcatacgccccgaggcatc
ttcgagctgaagtattttttctccagccatgtgagcacgtcagacggaggcgctgcctcc
tctaccgccattcgtgccttgatcaagaagctgatcagcgcggagaataccgcaaaacca
ctcagtgataacaagatagccgacctgctgaaagagcaaggatttaacgtagccagacgc
acagtggcaaaatatcgtgaagcgatgaacattccgccttctaatgagcgcaagcgtctg
gtttaa
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