Marinobacterium iners: CFI10_08690
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Entry
CFI10_08690 CDS
T07136
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mgeo
Marinobacterium iners
Pathway
mgeo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mgeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CFI10_08690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mgeo03400
]
CFI10_08690
Enzymes [BR:
mgeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CFI10_08690
DNA repair and recombination proteins [BR:
mgeo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CFI10_08690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QSR35071
LinkDB
All DBs
Position
complement(1822445..1825894)
Genome browser
AA seq
1149 aa
AA seq
DB search
MAVEFNFPLPKGPGDIRRLGQVQGSATGLLTQQIACRHNGLMLLICQDMESAERLQNEVR
FYSCDQLPVRLLPDWEILPYDSFSPHQDIISTRIQTLHQLPEQKHGVLILPISTLMHRLP
PLSFITASALFLEPGQKLDSIALRQRFTDAGYTAVDTVYEHGEFAIRGAIIDLYPMGSEL
PLRIDLFDDEIDTIRTFDPESQRSIDKVDRVRLLPAKEFPFHQDAITRFKQRWRERFDVD
HTRCPIYQDVSSGLTPPGIEYYAPLFFEQSATLFDYLPENTLILHDRQLNSAAEHFYHDV
RQRHDERRGDLQRPILSPEELFLSAEELFSTLRQRPVIRLNEEAEELKPGRDNLPCVDLP
DFSTDDRQTPLAALQAYRQHDTTPILICAESAGRREALLEHARKAGLDLAECDNWSDFIS
QRPNLAITTFALERGLFIPGQLQLITETQLFGRQVFQRRRREKQQIDSDQAIRHLSELTI
GAPVVHLDHGVGRYQGMQTISVDQQPAEFLVLEYADEAKLYVPVSSLHLIGRYSGASDES
APLHRLGTEQWSKARRKAAEKVRDSAAELLDIYARRAARKGFSFDCSEAEYARFAASFPF
EETPDQANTINAVVGDMRAAAPMDRLVCGDVGFGKTEVAMRAAFIAVQSGKQVAVLVPTT
LLAQQHFENFRDRFADWPVEVELISRFKSAKQQQATLLALSEGKVDILIGTHKLLQGDIR
FSDLGLLIIDEEHRFGVQQKERLKSLRSEVDILTLTATPIPRTLNMAMSGIRDLSIIATP
PARRLSVKTFVRQNDAPMVKEAILRELLRGGQVYYLHNEVKTIEKVAEEIAALVPEARVA
IGHGQMRERELEQVMSDFYHKRFNVLVCTTIIETGIDVPSANTIIIDRADKFGLAQLHQL
RGRVGRSHHQAYAYLLTPPVRAITQDAIKRLEAISEANTLGAGFTLATHDLEIRGAGELL
GEEQSGQMQSVGFGLYMEMLDQAIKAIREGKTPDLDKPLHHGCEINLHLPALIPDDYLPD
VHNRLIIYKRIANAADANALDELQVEMIDRFGLLPEPTRNLMRLTHLKLKAEALGIVKLD
AGDKAGRIEFEAEPNIDPLTLITMIQRQPQRFRLDGASVLRFTQPMEKVASRFEAVESLL
TQLSPKEKE
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
ttggcggtcgaattcaactttccattacccaagggccccggtgacatccgccgtctgggt
caggtacagggcagtgccaccggcctgttgacacagcagatcgcttgccgtcataacggc
ttgatgctgctgatctgtcaagatatggaaagcgcggagcggctgcagaatgaggtcagg
ttctacagttgtgaccaactgccagtgcgcttgctgcccgactgggagattctgccctat
gacagtttttcaccgcatcaggacattatttccacacgcatccagacattgcatcaactc
cccgaacagaaacacggtgtactgattctgccgatcagcacactgatgcaccgccttccc
ccactgagcttcattaccgccagcgctctgtttcttgagcctggacagaaactcgacagc
atcgccttgcgccaacgcttcacggacgccggctacactgccgtagatactgtctatgag
catggtgaatttgccatccgcggcgcaattatcgacctgtatcccatgggatctgagttg
ccgctgcgcatcgacctgttcgatgatgaaattgacaccatccgaacatttgacccggaa
agccaacgctccatcgacaaggtggatcgggtaagactgttgcctgcaaaagagttcccg
tttcatcaagatgccatcacccgcttcaagcagcgctggcgtgaacgctttgatgtggat
cacacccgctgccccatataccaggatgtatccagcggactgacgccgccgggtatcgaa
tactacgccccactctttttcgaacagtcagcaaccctgtttgactatctgcccgaaaac
accctgattcttcatgaccgacaactcaactcggcagccgaacacttctaccatgatgta
cgccaacgccacgatgaacgccgaggtgacctgcagcgcccgatactttcccctgaagag
ctgtttctttcagctgaagagcttttcagcactctgcgacaacgccccgtcatccgtctc
aatgaagaggcggaagagctcaagcctggccgtgacaacctgccctgtgtcgacctgccc
gacttcagcacggatgaccgccaaacaccgctggccgcccttcaggcatatcgacagcat
gacactacgccgatcctgatctgtgcggagtcagccggtcgccgtgaggccttgctggaa
catgcacgcaaggccggacttgatcttgctgagtgtgataactggtcggatttcatctca
caaaggcccaacctggccatcaccaccttcgcactggagcgtggactgttcataccaggc
cagctgcagctgatcacagagacacagctattcggacgccaggtatttcaacgtcgtcgg
cgtgaaaaacagcagatcgactcggatcaggccattcgccacctgtccgaactgaccatc
ggtgcaccggtagtgcaccttgatcatggtgttggccgctatcagggcatgcaaaccatt
agtgtcgatcaacagcctgccgaatttctggtgcttgaatatgccgatgaggccaaactg
tatgtgccggtatcctcactacatctgatcggtcggtactccggtgccagtgacgaatca
gccccattgcaccgattggggacagagcagtggagcaaggcacggcgcaaggcagccgaa
aaggttcgtgactctgctgccgagctgctcgacatctatgcacgccgtgctgcacgcaag
gggttcagttttgattgcagcgaggctgaatatgcgcgctttgcagccagtttcccattt
gaggaaaccccggaccaggccaataccattaatgcagtggtaggtgacatgcgcgctgcg
gcgcccatggatcggctggtgtgtggcgacgtcggcttcggcaagactgaggttgccatg
cgcgcggcctttatcgcggtacagagtggcaagcaggtcgccgtactggtacccaccacg
ctgctggcacaacagcattttgaaaacttccgtgaccgttttgccgattggcccgttgaa
gtggagctgatttcgcgcttcaaaagcgccaaacaacaacaggccactcttctcgcactc
agcgagggcaaggtcgacatcctgatcggcacgcataaactactgcagggggatatccgt
ttcagtgatctgggactgttgattattgatgaagaacaccgctttggcgtccaacaaaaa
gagcgcctcaaatcgctgcgttcagaagtcgatattctgaccctgacggcaaccccaatt
ccacggacgcttaacatggccatgtccggtatccgtgatctgtcgattattgccactccg
ccagcccgccgcctgtcggtcaaaacctttgtgcgccagaatgatgcacccatggtgaag
gaagcgatcctgcgtgagctgctgcgtggcggccaggtgtactacctccacaacgaggtc
aagacgatcgagaaagttgccgaggagatagcggctctggtaccggaagcaagggtggcc
attggccatggtcagatgcgcgagcgtgagctggagcaggtcatgagcgacttttatcac
aagcgctttaacgtactggtctgcaccaccatcattgaaaccggcattgatgtacccagt
gccaacaccattatcattgatcgcgccgacaaattcggcctggcccagctgcatcagctg
cggggtcgtgtaggccgctctcaccatcaggcttatgcctacctgttaacaccgccagtt
cgggccattacacaggatgcgatcaaacgactggaagcgatcagcgaggccaacaccctt
ggagccggttttacccttgccacccatgatctggagatccgtggtgcgggtgagctgctg
ggcgaagagcaaagcggtcagatgcaaagtgttggcttcggtctgtatatggaaatgctg
gatcaggcgatcaaggcgatccgcgagggcaagactcctgatctggacaagcctctgcat
catggctgcgagatcaacctgcacctgcccgcactgattccggatgactatctgccggac
gtacataatcgactgatcatctacaaacgcatagccaatgctgctgatgccaacgcactt
gatgaattgcaggttgaaatgattgatcgctttggcctgctgcccgaaccgacccgcaac
ctgatgagactgacgcatctcaaactgaaagcggaagccctgggcatcgtcaagcttgat
gccggcgacaaggccggtcgcatcgagtttgaagccgagccgaacatcgatccactgaca
ctgatcaccatgattcagcgccaacctcagcgcttccgtctggacggtgccagcgtattg
cggtttactcaacccatggaaaaggtcgcgtcccgctttgaagcggtcgagtcactgctc
acccaactgtcacccaaagagaaagagtaa
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