Marinobacterium iners: CFI10_08810
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Entry
CFI10_08810 CDS
T07136
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mgeo
Marinobacterium iners
Pathway
mgeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mgeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFI10_08810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mgeo03019
]
CFI10_08810
03009 Ribosome biogenesis [BR:
mgeo03009
]
CFI10_08810
Enzymes [BR:
mgeo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CFI10_08810
Messenger RNA biogenesis [BR:
mgeo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CFI10_08810
Ribosome biogenesis [BR:
mgeo03009
]
Prokaryotic type
rRNA processing factors
CFI10_08810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QSR35095
LinkDB
All DBs
Position
complement(1846998..1850312)
Genome browser
AA seq
1104 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLFDLDIESDSREQKKANIYKGRITRVEPSLEAAFVDFGAE
RHGFLPLKEIAREYFCKQPERGQRPNIKEMVKEGTEVIVQVDKEERGNKGAALTTFISLA
GRYLVLMPNNPRAGGISRRIEGDDRAQLKEALSGVNIPDGMGAIVRTAGIGRSSEELQWD
LDYLITLWDAVKEVNQRPAPFLVYQESNVVIRAIRDYLRADIGEVLIDNPTVYEQAVLFA
QQVMPSYENRIKLYKEQTPLFNRFQIESQIETAFEREVKLPSGGSIVIDPTEALVSIDIN
SARATRGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPIKNQREVENRLRD
SLKLDRARVQMGRISRFGLLEMSRQRLRPSLSESRGMVCPRCHGQGTIRDTESLALSILR
LIEEESSKDRTSQIRAILPVTVATYLLNEKRHEVHNAELRHQVRVVIVPNPNMETPHYEV
VRLRDDHTIATTHDASYTLQPEIEVETPDPGRVVPVKREQAAVKAVVPPTRAPQGKTEAN
TAVAAPEKPTAQTPSVTAAPAAASASFGERVLTTLRTLFGGKAESAPAKDNKQEAQPGIS
SNNDANDNRTSRGNRDSGRDNKRRARERRENDRRRNSRERRDSDEVITVERDANLPPIGE
TSNGDKDKKENNGRSRRRRSRNRRDEQSPRQENTSAEDNQSSNTPESKSEALQSQASQAE
VTEEGSRSRRRGRRRRNTEQRSATRTPLPQEMRDEKAEDEIQTLLAEDKITNATLAVPDA
AEQTEVVTAEVSPAAMHDSADQVHAAAKPQVAETATEAVETLAIENEPSTAQQESSTKEE
AVSAATSAEAVPDVPAPEETATSSATEAEPADEQPSAVEKAAAAEQSASVDTATEAESNE
QADNSSERKRSSRSRGRDRRGRGKSRQDKTADAEQTQPATDAENSSAAEMVEESVQSVPD
TAVELFAQSEDDTPKVAVESPATDQHSDQEANRNEAAEIDPATVETHAVKAELQPAESES
ESESESESESESESESESESESDNQQPAATEEKAEAETEANETKAEADDTASTKPVSRRR
ARRAPNDPREVRRRQQADNKDGDL
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atgcttatcaacgcaactcagcccgaagagttgcgcgttgcgctggttgacggccagcgt
ctgttcgatctggatatagaatccgacagtcgcgaacagaaaaaagccaacatctacaaa
ggccgcatcacccgggttgaacccagcctggaggcggcttttgttgattttggtgcagaa
cgccatggctttttgccgcttaaagagatcgcccgcgaatacttctgcaagcagcccgaa
cgtggccagcgtcccaacatcaaggaaatggtcaaggaaggcactgaggtcatcgttcag
gtcgataaggaagagcgtggcaacaaaggggcagcgctgactactttcatcagccttgct
ggtcgctatcttgttctgatgcctaacaacccacgtgccggcggcatttctcgccgcatc
gagggtgacgaccgcgctcagctcaaggaggcgctgtcaggtgtcaatatccctgacggc
atgggcgccattgtgcgcaccgctggcattggtcgcagttctgaagaactgcagtgggat
ctggattacctgattaccctttgggatgccgtcaaggaggttaatcagcgccctgctccc
ttcctggtctatcaggaaagcaacgtggtcattcgcgccatccgtgattacctgcgcgct
gacatcggcgaagtgctgattgacaacccaaccgtgtacgaacaggccgttctgtttgca
cagcaggtgatgccgagttacgagaaccgcatcaagctgtacaaggagcagactccgctg
ttcaaccgtttccagattgaaagccagatcgagaccgcgtttgaacgagaagtcaaactt
ccttccggtggctccattgttatcgatcccactgaagcgctggtatctatcgacatcaac
tctgcccgcgcaacccgcggtggtgacatcgaagaaaccgcattacagaccaacctggag
gcggccgaggagatcgcacgccagcttcgcctgcgtgatatcggcggacttatcgtaatc
gatttcatcgatatgacgccgatcaaaaaccagcgtgaagtggagaaccgcctgcgcgat
tcactcaaacttgaccgcgcccgcgttcagatgggacgaatttcacgcttcggtctgctt
gaaatgtcacgtcagcgtcttcgtccttcactgagtgagtctcgtggcatggtctgtccg
cgctgccacggtcaggggactattcgcgatacggaatcactggcactgtcgattctgcgc
ctgattgaagaagaatcctccaaggatcgcacatcacagattcgtgccatcctgccagtc
accgttgccacctatctgctcaatgaaaaacgtcatgaggtgcacaacgccgaactgcgt
catcaggtgcgtgtcgttatcgtacccaacccgaacatggaaacaccgcactacgaagtg
gttcgcctgcgtgacgatcatacaattgccaccacccatgatgcgagctacaccctgcag
ccagagatcgaggtagaaacacctgatcctggtcgtgtcgtgccggtgaagcgcgagcag
gctgccgtgaaagcggttgtaccacccactcgcgcaccacagggaaaaaccgaagcaaac
actgccgtggcagctcctgaaaagcccactgcccagaccccgtctgtcacagcagcacct
gccgccgcttcggcctcttttggtgaacgcgtactgactacattgcgcactctgttcgga
ggcaaggccgagtctgctccagccaaggataataagcaggaagcacagcccggtatctca
agcaataatgatgcaaacgacaaccgcaccagccgaggcaatcgtgacagcggtcgtgac
aataagcgccgcgcacgtgagcgccgcgagaatgatcgtcgccgcaacagccgtgagcgt
cgtgacagcgatgaggtcattacggttgagcgtgatgccaatctgccaccgattggcgaa
accagcaacggagacaaagacaagaaagaaaacaatggccgcagccgccgccgtcgcagt
cgcaaccgtcgcgatgagcagtcaccccgtcaggagaatacctcagctgaggacaaccag
agcagtaatacacctgaaagcaagtctgaggcactgcaatctcaagcatcccaggccgag
gtaacagaagaaggcagccgcagccgtcgtcgtggacgccgtcgtcgtaacaccgaacaa
cgcagcgccactcgtacacctctacctcaggaaatgcgtgacgaaaaggctgaagacgaa
attcagactctgcttgctgaagacaagatcaccaatgctaccttggcagtgcctgatgct
gctgagcaaactgaagtggtgacggccgaggtcagccctgcagcgatgcacgattctgca
gatcaggtacacgctgccgccaagccgcaagtcgctgagacagccactgaagcggtagag
accttggctatcgaaaacgagccttcgacagcacaacaagagtcatctaccaaagaggaa
gccgtttcggcagccacttctgctgaagcagtgccggatgtaccagcaccggaagagact
gcgacatcatctgccacggaagccgagccagctgatgaacagccctctgctgtagaaaaa
gctgcagcagccgagcagtctgcttcagtcgacactgccactgaagcggaaagcaacgag
caggccgataacagcagcgagcgaaagcgctccagtcgttcacgtggacgtgaccgtcgt
ggtcgtggcaagtctcgtcaggataagactgccgatgcagaacagacccagcctgcgact
gatgccgaaaacagttcagctgcagaaatggttgaagaatcagtgcagtcagtacctgac
accgctgtcgagctgtttgcccagagcgaggacgacacacccaaggtggctgttgagtcc
cccgctaccgatcagcacagtgatcaggaagccaaccggaatgaggctgcagaaatagac
ccggctacagtggaaactcatgcggtaaaagcggagctgcagccagctgagtctgagtct
gagtctgagtctgagtctgagtctgagtctgagtctgagtctgagtctgagtctgagtct
gagtctgataatcagcagcctgctgcaaccgaagaaaaagctgaagctgaaactgaagcc
aatgagacaaaggccgaggcagacgatacagcgtctaccaagcccgtgtctcgccgccgt
gctcgtcgtgcgcccaatgacccacgcgaagtgcgccgtcgtcagcaggcagacaataag
gacggtgacctgtaa
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