Marinobacterium iners: CFI10_16570
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Entry
CFI10_16570 CDS
T07136
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
mgeo
Marinobacterium iners
Pathway
mgeo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mgeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CFI10_16570 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mgeo03400
]
CFI10_16570 (recD)
Enzymes [BR:
mgeo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CFI10_16570 (recD)
DNA repair and recombination proteins [BR:
mgeo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CFI10_16570 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
AAA_11
Helicase_RecD
AAA_22
SH3_13
Viral_helicase1
SLFN-g3_helicase
UvrD-helicase
AAA_28
AAA_16
PhoH
NTPase_1
nSTAND3
DUF4287
HerA_C
T2SSE
Mg_chelatase
AAA_18
AAA_5
DEAD
Motif
Other DBs
NCBI-ProteinID:
QSR36571
LinkDB
All DBs
Position
complement(3464858..3466903)
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AA seq
681 aa
AA seq
DB search
MSEQVDLFATEASLHPALADWTVLESLLQRWQERGWIRSLDLALGRFLHDLDPNASPLVM
LAAVLVSHQLGRGHICVDLDSLLSAPDSALSLPPDGEFGEALPDRPVELLQGLGRGQWLQ
VLAETVLVSAGDPPAPLVLEPGTTRLYLYRQWRYEVEVAERIADRLQPVEVDDVRLRQRL
SELFHLQEGHLDWQQLACALVAGSRFGIITGGPGTGKTTTVVRLLALLQSLARDEGRTLR
IRLAAPTGKAAARLTESISGAIGHLPAEMQQGVPQEVTTLHRLLGARPNTRRFIHNVDNP
LHADLVVVDEASMIDLEMMHQLLAAMPARARLILLGDKDQLASVEAGSVLGDLCEGAERG
GYSRETLLQLQRRTGQDVAHWQSEAGSPSEQPLAQAIAMLRHSHRFGTDSGIGALARAVN
SGQPQAVNTVLAAGYVDLGWIHLKGDADRALERLILDGGPQPATAEGIQPRGYREYLEQL
STHRPESYDEQTQDVWARQVLDTFGEFQLLCALRRGPWGVEGLNARIAAVLQRAGLILRS
EGWYEGRPVLVTRNDYSLGLMNGDIGITLMRQETDGSTGLRVVFPLADGSLKWVLPSRLQ
AIETVYAMTVHKSQGSEFAHTALLLPPAVNPVLTRELVYTGITRASRWFTLLLSHPGRLD
DAVRARVRRASGLGKRLIRLS
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaacaggtcgatcttttcgcaaccgaagcctctttgcatccagcgctggccgac
tggactgtgctggaatcgctgctgcagcgctggcaggaacggggctggatacggtcgctg
gatctggcactgggtcgcttcctgcatgaccttgatcccaatgcctcgccgctggtgatg
ctggcggctgtgctggtcagccaccagttgggccgaggacatatctgcgttgatctggat
agtctgctctcggcgccggacagtgctctatcactaccaccagacggagaatttggcgaa
gctctgccagatcgaccggttgaattgttgcaggggcttgggcgtggtcagtggctgcag
gtgctggcggaaacggtgctggtcagtgcaggtgatccgcccgcaccgctggtgctggaa
ccgggcactacccgtctttatctctaccgccagtggcgttacgaagtggaggtcgctgaa
cggatagccgatcgcctgcaaccggttgaggtggatgacgttcgcctgcggcaacgcctg
tcagagctgtttcatctgcaagaggggcacctggactggcaacagctggcctgtgcgttg
gtggcgggcagtcgcttcggcatcattaccggtggccccggtacgggcaaaaccaccacg
gtcgttcgtttgctggcactgctgcaaagtctcgcccgtgatgaaggtcgcaccttgcgt
attcggctggcggcgcccacaggaaaggctgcggcgcggttgaccgaatcaatcagcggc
gcaattggacacctgcctgcagagatgcagcagggtgtcccgcaggaggtaacaactttg
caccggctgttgggagctcggcccaacacacgccgttttatccacaatgtggataacccg
ctgcatgccgatctggtcgtcgtggatgaggcttccatgattgacctggaaatgatgcac
cagttgttggctgcgatgccggccagggcacggctgattctgttgggcgacaaggatcag
ctggcctcagtggaagccggctcggtactgggggatttgtgcgaaggtgccgaacgaggc
ggttacagccgtgaaaccctgctgcaactgcagcggcgtaccgggcaggatgtggcgcac
tggcagtctgaagccgggagtccttctgagcagccgctggcgcaagccattgcgatgctc
agacacagccaccgctttggtaccgacagtgggataggagcattggcgcgagccgtcaac
agtggccagccacaggcggtaaataccgtgctggcggcgggttatgtcgatcttggctgg
attcacctcaagggtgatgcggacagggcactggagcgactgatactggatggcggcccc
cagccggccacggctgaaggaattcagcctcgcggctatcgcgagtatcttgagcagctg
agtacacacagacccgaaagctatgatgagcagacacaagacgtttgggccagacaagta
ctggacacctttggtgagtttcaactgctttgtgcgctgcgccgcggcccttggggagtc
gaggggctgaatgcacgtattgccgctgtgctgcagcgtgccgggttgatattacgcagt
gaaggttggtatgaaggcaggcctgtactggtcacccgtaacgattacagtctgggactg
atgaacggtgatatcggtattacccttatgcgccaggagacggatggatccactgggctg
cgtgtggtcttcccgctcgcggacggcagtctcaaatgggtcctgcccagtcggctgcag
gcgatcgaaaccgtgtacgcgatgactgtgcacaagtcgcagggctcggaatttgcacac
acggctctgctgctgccacccgcggtcaacccggtgctgacgcgggagctggtttacact
ggtattacacgcgccagtcgctggttcaccctgttgctgagccacccgggccgactggat
gatgccgtacgtgcgcgagtgcgccgggccagtgggttaggcaaaaggcttatacgcttg
tcttga
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