Marinobacterium iners: CFI10_16575
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Entry
CFI10_16575 CDS
T07136
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
mgeo
Marinobacterium iners
Pathway
mgeo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mgeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CFI10_16575 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mgeo03400
]
CFI10_16575 (recB)
Enzymes [BR:
mgeo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CFI10_16575 (recB)
DNA repair and recombination proteins [BR:
mgeo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CFI10_16575 (recB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QSR36572
LinkDB
All DBs
Position
complement(3466896..3470642)
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AA seq
1248 aa
AA seq
DB search
MTTPHTQPQTLNPLAFPLHGHRLIEASAGTGKTFTIAALYVRLVLGHGNTDTRFQRDLLP
PEILVVTFTNAATRELRDRIRTRLAEAARVFRGQSAPDPFLQQLLAEPEFAMEEARALAA
RKLEQAAEWMDEAAVYTIHSWCQRMLTQHAFDTGSLFRQQLEQDDSELLAEMARDYWRSW
CYALSPIVAEALSELAADPDALLQAVKPLLQPGDQQVRYQGSSISEAQSPAEYARKLNDW
LPQKQQLEQRARTLWLAEHDEIETLLISAAQKKILNNTSYKPETLPEKLADMVVWAEGGM
LSSDRLAHFARAKLTDKTAKKMQDQTPEHPVFDLLQELVDYLQLQPPLQPVQLHAAQWIQ
QRFDRSRERAAALGFNDMLVRLDHALQGEGGDRLAATIRRQYPVALIDEFQDTDPLQYRI
FSRIYRGTNLPDADPSECALLMIGDPKQAIYAFRGADIHTYLQARRDTRGCHYTLGRNFR
SSKALVEAVNRLFEHAEASQASGAFRFAREGDNPLPFIPVDANGRKTVFEVEGVRPSALT
HWLLDEDAADGIAVGDYRRLMAEHSASQIRHLLSLSQQQRAGFRSENGQLNPIRPSDIAI
LVRNGSEARLVRDALQQRNVRSVYLSDQASVYASAEAEDLWRWLRACAEPEQPGLLQGAL
ASRTLDLGYVHLEQITRDEQLWEQAVERFRHLRDIWQRQGVLPMVRHLLDSFELPARLLQ
DAGGERVLTNLLHLAELLQAASSQLEGEQALIRYLQEQIMDSGQGGDEHIMRLESDADLV
QVVTIHKSKGLEYPLVFLPFICAYREVTASDGSYRYQSEQGSVLELDSKDESAKRAAEAE
RLQEDLRLLYVALTRPVFACWLGVAAIKYNRSLSLHKSAFGQLLGCESKTDSATLKARLQ
PLVSAGVIEVEPPPTIDAELLPDTATVTALAPARLCDRPVAAERWWIASYSAISQLQGRA
EQEQPAEAEPAESAREETARENLDEPSTRAVVVEFAYDPHHFWKGPQAGTFLHGVLEWAA
EEGFERVAREAPLRHQFLAPRCQRREWQPWLPVLDDWLQKLLTIPLPLVGQSVPLAQLQQ
YQAEMEFWLEVAEVPVSRLDRLITQQVLPGLPRPALAPQQLGGMLKGFIDLVFEHQGRYW
VADYKSNWLGPDNSHYSAAAMQKAVLDKRYDVQYVLYLLALHRLLKARLPGYADDPIRGY
EQHVGGALYLFLRGITEPEQHGCCIDRPSAQLIETLDALLANRESAHV
NT seq
3747 nt
NT seq
+upstream
nt +downstream
nt
atgactacaccgcacactcagccacagacactgaatccgctggcttttccactgcatggg
catcgcctgatcgaggccagtgccggtaccggcaagaccttcactatcgccgcgctctat
gtgcgtctggtactgggccatggcaatactgatactcgctttcaacgtgacctgttaccg
cctgagattctggtggtgaccttcaccaatgcagccacccgtgaattgcgtgaccgaatc
cgcactcgcctggccgaggccgcgcgcgtatttcgtggtcagtccgcgcctgatccgttc
ctgcagcagctgctcgccgagcccgagtttgccatggaagaggcacgagcgctggccgcc
cgcaaactggagcaggccgctgagtggatggatgaagccgcggtatacaccatccacagc
tggtgccagcgcatgctcacccagcacgcttttgataccggcagcctgttccgccagcag
ctggagcaggatgacagcgaattgctggccgagatggcacgtgactactggcgcagctgg
tgctacgcactgtcgccgatcgtggccgaagcactgagtgaactggccgctgatcccgat
gctctgctgcaggcggtcaaacccctgctgcagccgggtgatcaacaggtacgatatcag
ggcagcagtatcagcgaggctcagtcccctgcagaatatgcccggaagttgaacgactgg
ctgccacagaagcagcagctggagcagcgggcacgcaccctctggctggctgagcacgac
gaaattgaaacgctgctaatcagtgccgcccaaaagaagattctgaataacaccagctac
aagccggaaaccctgcctgaaaagctggctgacatggtggtctgggctgaagggggcatg
ctgtcgagtgacaggttggcccactttgcgcgtgcaaagctgaccgataaaacagccaaa
aagatgcaggaccagacgccggagcatccggtattcgacctgttacaggagctggtggat
tacctgcagctgcagcctccgctgcaaccggtacagctgcatgcggcgcaatggattcag
cagcgttttgatcgatcccgcgagcgcgcagcggcgctcggcttcaatgacatgctggtg
cggctggatcacgcactgcagggcgaagggggtgatcgccttgccgcaaccattcgtcgt
cagtacccggtcgcactgatcgacgagtttcaggataccgatccactgcagtaccgtatt
tttagccgcatctatcgcggcacgaacctgccggatgccgacccttcagaatgcgcactg
ttgatgataggtgaccccaaacaggcgatctacgcctttcgtggtgccgatattcatacc
tatctgcaggcacgacgtgataccagagggtgccactataccctcggccgcaatttccgt
tcatcaaaagccttggtggaggcggtcaaccggctgtttgagcatgctgaagccagccag
gccagtggtgccttccgttttgcccgtgagggtgataacccgttgccgtttattccggtg
gatgccaacggccgcaaaacggtatttgaggttgaaggcgtacggccatcagccctgacg
cactggctgttggatgaggacgcggctgatgggatagccgtcggtgattaccgcaggctg
atggccgagcacagtgccagccagattcgtcacctgctttcactgtcgcaacagcaacgg
gctggctttcgctccgagaatggccagctgaacccgatcaggccaagtgatatcgccatt
ctcgtgcgcaacggcagcgaggcccggctggttcgtgatgccctgcagcaacgcaacgtt
cgcagtgtgtacctttccgatcaggcttcggtctatgccagtgccgaagctgaggacctc
tggcgctggctgcgcgcctgtgccgaaccggagcagccgggcctgctgcagggtgcgttg
gccagtcgaacgctggatctgggctacgttcacctggaacagataacccgtgatgagcag
ctgtgggaacaggcagtggagcggttccgccatttgcgtgacatttggcagcggcagggt
gttctgccaatggtacgtcaccttctggacagttttgagcttcctgcccgtctgctacag
gatgcgggtggtgagcgggtgctgactaacttgctgcatcttgccgaacttctgcaggcg
gccagtagccagctggaaggtgagcaggccctgattcgctacctgcaggaacagatcatg
gacagcggccaggggggtgatgaacacatcatgcggctggaaagtgatgccgacctggtg
caggtggtgaccattcacaagtccaaggggctggaatatccgctggtgtttctgcccttc
atctgtgcctaccgtgaagtgactgccagtgacggcagctaccgctatcagtcggagcag
ggcagtgtactggaactggacagcaaggatgaaagcgccaagcgggctgcagaagccgag
cggcttcaggaagatctgcgcctgctctatgtggcactgacccgccccgtgttcgcgtgt
tggctgggggtggctgcaatcaaatacaaccgttcgctcagtctgcacaaaagcgctttc
ggccaattgttgggttgcgaatcgaaaaccgacagcgcgacgctcaaggcccggctgcaa
ccgctggtcagtgccggtgtgatcgaagtggagcctccgccgacaatcgatgccgagttg
ctgccggacactgccactgtaacagcactggcaccggcacgcctctgcgatagaccggtt
gcagctgaacgctggtggatcgccagttacagtgcgatcagccagctgcaggggcgggcc
gagcaggagcagcccgccgaggctgagccggctgaaagtgcccgtgaagaaaccgctcgg
gaaaatctggatgagccgtcaacgcgtgccgttgtggttgagtttgcctatgatccgcat
catttctggaaaggccctcaggcgggtacctttttgcacggtgtactggaatgggcagcg
gaagagggctttgagcgagtggcacgggaggcgccactgcgacaccagtttctggcaccg
cgctgccagcggcgggaatggcaaccctggttgccggtgctggacgattggttgcagaag
ctgctgactatccccctgccactggttgggcaaagtgtaccgctggcgcaattgcaacag
tatcaggccgagatggagttctggctggaggttgctgaggtgccggtaagtcgactggac
cgcctgatcacgcagcaggtgttaccgggcctgccgcgtcctgcactggcaccgcagcag
ctgggcggcatgctcaagggatttatcgatctggtgttcgagcatcaggggcgctactgg
gtggccgattacaagtccaactggttggggccggacaacagtcactacagcgctgcggcg
atgcaaaaggcggtgctggataagcgctacgacgtgcagtatgtgctttatctgctggcg
ttgcaccggctgctcaaggcccggttgccgggttatgccgatgaccccatccggggctac
gaacagcatgtaggcggtgctctttatctgtttctgcgtggcattacagaaccggagcag
catggctgctgcattgatcgtccgtcagcgcagttgattgaaacactggatgcactgctg
gccaacagggagagtgctcatgtctga
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