Mycolicibacterium gilvum PYR-GCK: Mflv_1948
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Entry
Mflv_1948 CDS
T00498
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mgi
Mycolicibacterium gilvum PYR-GCK
Pathway
mgi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mgi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Mflv_1948
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mgi03400
]
Mflv_1948
Enzymes [BR:
mgi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Mflv_1948
DNA repair and recombination proteins [BR:
mgi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Mflv_1948
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
Cas3-like_C_2
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ABP44428
UniProt:
A4T6M5
LinkDB
All DBs
Position
2025801..2029397
Genome browser
AA seq
1198 aa
AA seq
DB search
MTASGTLHVHTPIAGLVGLALRDPSLQEIARRGVDRPADLHFVGPASARLFVASALAQAG
LLLVVTATGREADDLTAELRGVFGDAVAMFPSWETLPHERLSPGVDTVGARMMLLRRLAF
PDDARLGEPLRVVVTTARSLLQPMAPDLARIDPVTLTVGGEADFDETVARLVDLAYTRVD
MVGKRGEFAVRGGILDLFPPTAEHPVRVEFWGDEISEMRMFSVADQRSIPEIEIDTVIAV
PCRELLLTADVRERAAALAEEHPVSENNVPGSVPDMLARLAEGIPVDGMEALLPLLRPSD
FATLPDHLPEGTPLLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGDVPIDLEALGAS
GYVTYNEARDAARDGGHGWWTLSQLDSGAGESTALDIRPAPSARGQHNLEEIFAMLRAHV
ATGGCGVVVTPGAGTCQRVVEQLSESDTPAMILEPGMAPKDGVVGVLKGPLHDGVVIPGA
NLVVITETDLTGNRAAATEGKKLAAKRRNVVDPLALTAGDLVVHDQHGIGRFVEMTERVI
GGARREYLVLEYASAKRGGGADRLYVPMDSLDQLSRYVGGEAPTLSRLGGSDWANTKTKA
RRAVREIAAELVTLYAKRQASPGHAFSPDTPWQVEMEDAFGFTETVDQLTAITEVKSDME
KPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTARMTGFP
VTVRGLSRFTDPASSRATLEGMKDGSVDIVIGTHRLIQTGVTWKDLGLVIVDEEQRFGVE
HKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGQHDDKQ
VAAALRREMLRDGQAFYIHNRVRTIDSAAAKIRQLVPEARVVVAHGQMPEEQLEKTVEGF
WNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYP
PEVPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVR
LVGEAVEAYRAAADGKTVATPEEPKDVRIDLPVDAHLPPDYIGSDRLRLEGYRRLAAAPD
DAAVDAVVEELVDRYGPLPEPAELLVAVARLRLLARAAGITEVGAVSASASTLRISPLTL
PDSAQLRLKRLYSGANYRATTSTVQVPIPRAGQGVGAPRIRDRELVDFVAGLIKVLGE
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcatcggggactctccatgtccataccccgatcgcgggcctcgtcggactcgcg
ctgcgcgacccctccctgcaggagatcgcacgccgtggcgtcgaccggcccgccgatctc
catttcgtcgggcccgcgagcgcccgcctgttcgtggcgtccgcgctcgcccaggctgga
ctgctgctggtcgtcaccgcgacgggacgcgaggccgacgacctgaccgcagagctgcgt
ggcgtgttcggtgacgcggtggcgatgttcccgtcgtgggaaaccctgccgcacgaacgt
ctctcaccgggcgtcgacaccgtcggcgcgcggatgatgctgctgcgccggctggccttc
cccgacgacgcccgcctcggtgagccgctgcgggtggtcgtcaccaccgcgcgttcgctg
ctgcagccgatggcgccggacctggcccggatcgacccggtgacgctgaccgtcggcggc
gaggcggacttcgacgagacggtcgcgcggctggtcgaccttgcctacacgcgcgtcgac
atggtgggtaagcggggtgaattcgcggtccgcggaggcattctcgatctcttcccgccg
acggccgagcatccggtgcgcgtcgagttctggggcgacgagatctccgagatgaggatg
ttctcggtcgccgaccagagatcgatcccggagatcgagatcgacaccgtcatcgcggtg
ccgtgccgtgagctcctgctgaccgccgatgtccgcgagcgtgccgctgcgctcgccgaa
gagcacccggtctcggagaacaacgtgccgggcagcgtgcccgacatgctggcgcggctt
gccgagggcatcccggtcgacgggatggaggcgctgcttccgttgttgcggcccagcgat
ttcgccactctgcccgatcacctgcccgagggcaccccgctgctggtgtgcgaccccgag
aaggtccgcacccgcgccgccgatctgatcaagaccgggcgcgagttccttgaggcgtcc
tggtcgacggccgccgtcggcggggacgtgccgatcgacctcgaggcgctcggcgcgtcc
gggtacgtgacctacaacgaggcgcgggacgccgcgcgtgacggcgggcatgggtggtgg
acgctgagccagctcgacagtggcgccggcgagtccaccgccctcgacatccggccggcg
ccgtcggcgcgtggccagcacaacctagaagagatcttcgcgatgctgcgcgcccacgtc
gcgaccggaggctgtggcgtggtcgtcaccccgggtgcgggaacctgccagcgggtcgtc
gagcagctctccgaatcggacacgcccgcaatgattctcgagcccggcatggcgccgaag
gatggtgtggtcggtgtcctgaagggcccgctgcacgacggtgtggtgatcccgggcgcg
aacctcgtcgtgatcaccgagaccgacctgaccggcaaccgggccgcggccaccgagggc
aagaagctggcggccaagcgccgcaacgtcgtcgacccgctcgcgctgaccgccggtgac
ctcgtcgtgcacgaccagcacggcatcggccgcttcgtcgagatgaccgaacgcgtgatc
ggcggtgcccgccgggagtacctggtgctggagtacgcgtcggccaagcgcggcggcggg
gcggaccggttgtacgtgccgatggactcactcgatcagctgtcgcgctacgtcggcggc
gaggcgccgacgctgtcacgcctcggcggcagtgactgggcgaacacgaaaaccaaagcg
cgacgggcggttcgagagatcgccgccgagctggtgacgctgtacgccaagcgtcaggcg
tcaccggggcacgcgttctccccggacaccccgtggcaggtcgagatggaggacgcgttc
ggcttcaccgagaccgtcgatcagctcaccgccatcaccgaggtcaagtcggacatggag
aaaccggtcccgatggaccgggtgatctgcggtgacgtggggtacgggaagaccgagatc
gcggtacgggcggcgttcaaggccgtacaggacggcaagcaggtcgcggtgctggtgccg
acgacgttgctggccgatcagcacctgcagacgttcaccgcgcggatgaccggtttcccg
gtcaccgtcaggggcttgtcgcggttcaccgatccggcgtcgtcgcgagcgacgctcgaa
gggatgaaggacggttcggtcgacatcgtcatcgggacgcaccggctgatccagacgggc
gtgacgtggaaggacctcgggctggtcatcgtggacgaggagcagcgcttcggcgtcgag
cacaaggagcacatcaaatcgatgcgcacccacgtcgacgtgctgacgatgagcgccacc
ccgatcccgcgcacgctggagatgagcctggccgggatccgcgagatgtcgacgatcctg
actccgccggaggagcgctacccggtgctgacctacgtcgggcagcacgacgacaagcag
gtcgccgcggcgctgcggcgcgagatgctgcgtgacgggcaggcgttctacatccacaac
cgggtccgcaccatcgactcggcagcggcgaagatccgtcagctggtgcccgaggcccgg
gttgtcgtcgcccatggccagatgcccgaggagcagctggagaagaccgtcgaggggttc
tggaaccgcgagtacgacatcctggtctgcaccacgatcgtcgagacgggactggacatc
tcgaacgcgaacacgttgatcgtcgagcgtgccgatacgttcggtctgtcgcagctacat
cagctgcggggccgggtgggacggtcgcgggagcgcggctacgcgtacttcctgtacccg
ccggaggtgccgctgaccgagacggcctacgaccggctggcgaccatcgcgcagaacaac
gagctcggggccggcatggccgtcgcgatgaaggacctcgagatccgcggtgccggaaac
gtgttgggcgccgagcagtccggccatgtcgccggcgtcggtttcgacctgtacgtgcgg
ctggtcggcgaggccgtagaagcatatcgggcggctgcggacgggaaaaccgttgcgaca
ccggaagagccgaaggatgtgcggatcgatcttccggtcgatgcgcacctgccgcccgac
tacatcggcagcgaccggttgcgcttggagggctatcgccggctcgcggcggcgcccgac
gacgccgcggtggacgcggtcgtcgaggaactcgtggacaggtacgggccgctgcccgaa
ccggcggagttgctggtggcggtggcgcggctgcgcctgctggcgcgtgcggcgggtatc
accgaggtcggtgcggtgtcggcgtcggcgtcgacgctgcggatctctccgctgaccctg
ccggactcggcgcaactgcggctcaagaggctctactcgggcgcgaactatcgcgccacc
acctcgacggtccaggtgccgatcccgcgggcggggcagggggtcggtgccccgcggatc
cgcgaccgggagctggtggacttcgtcgccggtctgatcaaggtgctgggcgagtag
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